Factsheet for VIT_12s0028g03700.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane, peroxisome

Predictor Summary:

nucleus 1
plasma membrane 3
extracellular 1
golgi 1
endoplasmic reticulum 1
vacuole 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0061g00230.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G03560.1	VIT_06s0061g00230.t01	AT1G51500.1	15299147

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047241	Potato	extracellular	30.6	55.17
KRH22384	Soybean	plasma membrane	68.31	33.88
KRH26949	Soybean	plasma membrane	67.21	33.29
Solyc07g053970.2.1	Tomato	nucleus	66.94	33.15
AT4G03560.1	Thale cress	plasma membrane	65.85	32.88
CDY21975	Canola	plasma membrane	65.85	32.66
Bra000820.1-P	Field mustard	plasma membrane	63.11	31.6
CDY61997	Canola	plasma membrane	61.48	31.42
Zm00001d011595_P007	Maize	plasma membrane	62.57	31.37
CDY48568	Canola	plasma membrane	61.48	31.29
Bra034219.1-P	Field mustard	plasma membrane	61.48	31.21
KXG33111	Sorghum	plasma membrane	62.57	30.49
Os01t0678500-02	Rice	plasma membrane	62.02	29.99
TraesCS3D01G268800.1	Wheat	plasma membrane	60.66	29.92
TraesCS3A01G268700.1	Wheat	plasma membrane	60.11	29.65
TraesCS3B01G303100.1	Wheat	plasma membrane	60.11	29.65
CDY48215	Canola	plasma membrane	62.3	28.43
GSMUA_Achr4P15260_001	Banana	plasma membrane	3.83	4.02
VIT_12s0028g03650.t01	Wine grape	plasma membrane	0.27	0.41

Protein Annotations

Gene3D:1.10.287.70	EntrezGene:100233073	wikigene:100233073	MapMan:24.3.2.1	ProteinID:ACH53197	ProteinID:ACH53197.1
ProteinID:CCB47281	ProteinID:CCB47281.1	ncoils:Coil	EMBL:EU925561	UniProt:F6H5D1	EMBL:FN595235
GO:GO:0003674	GO:GO:0005215	GO:GO:0005216	GO:GO:0005245	GO:GO:0005261	GO:GO:0005488
GO:GO:0005509	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0006811
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0034220	GO:GO:0055085	GO:GO:0070588
GO:GO:0086010	GO:GO:0098655	InterPro:Ion_trans_dom	PFAM:PF00520	PANTHER:PTHR10037	PANTHER:PTHR10037:SF231
TMHMM:TMhelix	EntrezGene:TPC1	InterPro:TPC1	wikigene:TPC1	UniParc:UPI00021083F3	ArrayExpress:VIT_12s0028g03700
EnsemblPlantsGene:VIT_12s0028g03700	EnsemblPlants:VIT_12s0028g03700.t01	unigene:Vvi.12202	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:-:4558806..4593022

Molecular Weight (calculated)

42708.8 Da

IEP (calculated)

8.481

GRAVY (calculated)

0.369

Length

366 amino acids

Sequence
(BLAST)

001: MDKPLLDGES SGGRRRGQTP VFHRRSDAIA YGSPYQKAAA LVDLAEDGIG LPEQMLDQES FESAAKFYFI FIRFNFLWSL NLFALIVLNF LEKPLWCAKQ
101: TTYSCNDREY YFLGQLPYLT SVESLIYEGI TLVIILLHTF FPISYEGSQI YWKNPLNRLK VILLSILVAD LLVYVLYLSP LPFYYLPFRL APYIRVILCI
201: LNIREVRATM VILAGMLGTY LNIMALGLLF LLFASWVAYV MFEDTQQGKT VFTSYLTTLY QMFILFTTSN NPDVWIPAYK VSRWYCLFFV LYMLLGVYFM
301: TNLILAVIYD SFKNQLAKQV AEMDRMRRRI LEKAFNLIDK SNLGFLKKEQ CIHLFEELNK YRFCLA

Best Arabidopsis Sequence Match ( AT4G03560.1 )
(BLAST)

001: MEDPLIGRDS LGGGGTDRVR RSEAITHGTP FQKAAALVDL AEDGIGLPVE ILDQSSFGES ARYYFIFTRL DLIWSLNYFA LLFLNFFEQP LWCEKNPKPS
101: CKDRDYYYLG ELPYLTNAES IIYEVITLAI LLVHTFFPIS YEGSRIFWTS RLNLVKVACV VILFVDVLVD FLYLSPLAFD FLPFRIAPYV RVIIFILSIR
201: ELRDTLVLLS GMLGTYLNIL ALWMLFLLFA SWIAFVMFED TQQGLTVFTS YGATLYQMFI LFTTSNNPDV WIPAYKSSRW SSVFFVLYVL IGVYFVTNLI
301: LAVVYDSFKE QLAKQVSGMD QMKRRMLEKA FGLIDSDKNG EIDKNQCIKL FEQLTNYRTL PKISKEEFGL IFDELDDTRD FKINKDEFAD LCQAIALRFQ
401: KEEVPSLFEH FPQIYHSALS QQLRAFVRSP NFGYAISFIL IINFIAVVVE TTLDIEESSA QKPWQVAEFV FGWIYVLEMA LKIYTYGFEN YWREGANRFD
501: FLVTWVIVIG ETATFITPDE NTFFSNGEWI RYLLLARMLR LIRLLMNVQR YRAFIATFIT LIPSLMPYLG TIFCVLCIYC SIGVQVFGGL VNAGNKKLFE
601: TELAEDDYLL FNFNDYPNGM VTLFNLLVMG NWQVWMESYK DLTGTWWSIT YFVSFYVITI LLLLNLVVAF VLEAFFTELD LEEEEKCQGQ DSQEKRNRRR
701: SAGSKSRSQR VDTLLHHMLG DELSKPECST SDT

Arabidopsis Description

TPC1AT4G03560 protein [Source:UniProtKB/TrEMBL;Acc:B9DFD5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.