Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- vacuole 1
- mitochondrion 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G03560.1 | CDX87823 | AT1G51500.1 | 15299147 |
| AT4G03560.1 | CDY43913 | AT1G51500.1 | 15299147 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034219.1-P | Field mustard | plasma membrane | 99.3 | 99.03 |
| CDY21975 | Canola | plasma membrane | 98.19 | 95.66 |
| CDY61997 | Canola | plasma membrane | 94.71 | 95.11 |
| AT4G03560.1 | Thale cress | plasma membrane | 92.63 | 90.86 |
| CDY48215 | Canola | plasma membrane | 94.58 | 84.79 |
| VIT_12s0028g03650.t01 | Wine grape | plasma membrane | 22.53 | 66.94 |
| KRH22384 | Soybean | plasma membrane | 65.92 | 64.23 |
| KRH26949 | Soybean | plasma membrane | 65.37 | 63.6 |
| Solyc07g053970.2.1 | Tomato | nucleus | 65.37 | 63.6 |
| VIT_12s0028g03700.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 31.29 | 61.48 |
| GSMUA_Achr4P15260_001 | Banana | plasma membrane | 28.37 | 58.62 |
| TraesCS3B01G303100.1 | Wheat | plasma membrane | 58.41 | 56.6 |
| KXG33111 | Sorghum | plasma membrane | 59.11 | 56.59 |
| TraesCS3D01G268800.1 | Wheat | plasma membrane | 58.28 | 56.47 |
| TraesCS3A01G268700.1 | Wheat | plasma membrane | 58.14 | 56.33 |
| Os01t0678500-02 | Rice | plasma membrane | 59.25 | 56.27 |
| Zm00001d011595_P007 | Maize | plasma membrane | 53.27 | 52.47 |
| PGSC0003DMT400047241 | Potato | extracellular | 14.33 | 50.74 |
Protein Annotations
| Gene3D:1.10.238.10 | Gene3D:1.10.287.70 | Gene3D:1.20.120.350 | MapMan:24.3.2.1 | GO:A0A078IHJ2 | UniProt:A0A078IHJ2 |
| EnsemblPlants:CDY48568 | ProteinID:CDY48568 | ProteinID:CDY48568.1 | InterPro:EF-hand-dom_pair | InterPro:EF_hand_dom | GO:GO:0003674 |
| GO:GO:0005215 | GO:GO:0005216 | GO:GO:0005244 | GO:GO:0005245 | GO:GO:0005488 | GO:GO:0005509 |
| GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006811 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0034220 | GO:GO:0055085 | GO:GO:0070588 | EnsemblPlantsGene:GSBRNA2T00091304001 | InterPro:IPR002048 | InterPro:IPR027359 |
| InterPro:Ion_trans_dom | PFAM:PF00520 | PFscan:PS50222 | PANTHER:PTHR10037 | PANTHER:PTHR10037:SF231 | SMART:SM00054 |
| SUPFAM:SSF47473 | SUPFAM:SSF81324 | TMHMM:TMhelix | InterPro:TPC1 | UniParc:UPI0004EEFC18 | InterPro:Volt_channel_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
BnaA09g01640DBnaA09g01640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IHJ2]
Coordinates
chrLK032779:+:98916..103843
Molecular Weight (calculated)
83368.1 Da
IEP (calculated)
4.751
GRAVY (calculated)
0.189
Length
719 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDPLIGRES RGGGGGTDRI VRRSEAITHG TTFQKAAALV DLAEDGIGLP EQILDQSSFG ESAKYYFIYT RLDLIWSLNY FALILINFFE QPLWCENKPT
101: PSCKDRDYYY LGELPYLTDA ESIIFEARSR IFWTSRLNLV KVACVVVLIV DVLVDILYLS PVAFDFLPFR IAPYVRVIIF ILSIRELRDS LILLSGMLGT
201: YLNILALWML FLLFASWIAF VMFEDTQQGL TVFTSYGATL YQMFILFTTS NNPDVWIRAY KSSRWSSLFF VLYVLIGVYF VTNLILAVVY DSFKEQLAKQ
301: VSGMDQMKRR MLEKAFGLID KDKTGQIDKE QCIKLFEQLT NYRTLPKISK EEFGLIFDEL DDTRDFKINK DEFADLCQAI ALRFQKEEVP SLFENFPQVY
401: HSALSQQLRA FVRSPRFGYA ISFILVLNFI AVVVETTLDI EESSAQKPWQ VAEFVFGWIY VLEMALKIYS YGFENYWRDG QNRFDFIVTW VIVIGETATF
501: ITPDENTFFS NGEWIRYLLL ARMLRLIRLL MHVQRYRAFI ATFITLIPSL MPYLGTIFCV LCIYCSIGVQ VFGGLVNAGN KQLFKTEMAE DDYLLFNFND
601: YPNGMVTLFN LLVMGNWQVW MESYKDLTGT WWSITYFVSF YIITVLLLLN LIVAFVLEAF FTELDLEEEE KCQGQDSQER RNRRRSAGSK SRSQRVDTLL
701: HHMLGDELSK PECSTATDT
101: PSCKDRDYYY LGELPYLTDA ESIIFEARSR IFWTSRLNLV KVACVVVLIV DVLVDILYLS PVAFDFLPFR IAPYVRVIIF ILSIRELRDS LILLSGMLGT
201: YLNILALWML FLLFASWIAF VMFEDTQQGL TVFTSYGATL YQMFILFTTS NNPDVWIRAY KSSRWSSLFF VLYVLIGVYF VTNLILAVVY DSFKEQLAKQ
301: VSGMDQMKRR MLEKAFGLID KDKTGQIDKE QCIKLFEQLT NYRTLPKISK EEFGLIFDEL DDTRDFKINK DEFADLCQAI ALRFQKEEVP SLFENFPQVY
401: HSALSQQLRA FVRSPRFGYA ISFILVLNFI AVVVETTLDI EESSAQKPWQ VAEFVFGWIY VLEMALKIYS YGFENYWRDG QNRFDFIVTW VIVIGETATF
501: ITPDENTFFS NGEWIRYLLL ARMLRLIRLL MHVQRYRAFI ATFITLIPSL MPYLGTIFCV LCIYCSIGVQ VFGGLVNAGN KQLFKTEMAE DDYLLFNFND
601: YPNGMVTLFN LLVMGNWQVW MESYKDLTGT WWSITYFVSF YIITVLLLLN LIVAFVLEAF FTELDLEEEE KCQGQDSQER RNRRRSAGSK SRSQRVDTLL
701: HHMLGDELSK PECSTATDT
001: MEDPLIGRDS LGGGGTDRVR RSEAITHGTP FQKAAALVDL AEDGIGLPVE ILDQSSFGES ARYYFIFTRL DLIWSLNYFA LLFLNFFEQP LWCEKNPKPS
101: CKDRDYYYLG ELPYLTNAES IIYEVITLAI LLVHTFFPIS YEGSRIFWTS RLNLVKVACV VILFVDVLVD FLYLSPLAFD FLPFRIAPYV RVIIFILSIR
201: ELRDTLVLLS GMLGTYLNIL ALWMLFLLFA SWIAFVMFED TQQGLTVFTS YGATLYQMFI LFTTSNNPDV WIPAYKSSRW SSVFFVLYVL IGVYFVTNLI
301: LAVVYDSFKE QLAKQVSGMD QMKRRMLEKA FGLIDSDKNG EIDKNQCIKL FEQLTNYRTL PKISKEEFGL IFDELDDTRD FKINKDEFAD LCQAIALRFQ
401: KEEVPSLFEH FPQIYHSALS QQLRAFVRSP NFGYAISFIL IINFIAVVVE TTLDIEESSA QKPWQVAEFV FGWIYVLEMA LKIYTYGFEN YWREGANRFD
501: FLVTWVIVIG ETATFITPDE NTFFSNGEWI RYLLLARMLR LIRLLMNVQR YRAFIATFIT LIPSLMPYLG TIFCVLCIYC SIGVQVFGGL VNAGNKKLFE
601: TELAEDDYLL FNFNDYPNGM VTLFNLLVMG NWQVWMESYK DLTGTWWSIT YFVSFYVITI LLLLNLVVAF VLEAFFTELD LEEEEKCQGQ DSQEKRNRRR
701: SAGSKSRSQR VDTLLHHMLG DELSKPECST SDT
101: CKDRDYYYLG ELPYLTNAES IIYEVITLAI LLVHTFFPIS YEGSRIFWTS RLNLVKVACV VILFVDVLVD FLYLSPLAFD FLPFRIAPYV RVIIFILSIR
201: ELRDTLVLLS GMLGTYLNIL ALWMLFLLFA SWIAFVMFED TQQGLTVFTS YGATLYQMFI LFTTSNNPDV WIPAYKSSRW SSVFFVLYVL IGVYFVTNLI
301: LAVVYDSFKE QLAKQVSGMD QMKRRMLEKA FGLIDSDKNG EIDKNQCIKL FEQLTNYRTL PKISKEEFGL IFDELDDTRD FKINKDEFAD LCQAIALRFQ
401: KEEVPSLFEH FPQIYHSALS QQLRAFVRSP NFGYAISFIL IINFIAVVVE TTLDIEESSA QKPWQVAEFV FGWIYVLEMA LKIYTYGFEN YWREGANRFD
501: FLVTWVIVIG ETATFITPDE NTFFSNGEWI RYLLLARMLR LIRLLMNVQR YRAFIATFIT LIPSLMPYLG TIFCVLCIYC SIGVQVFGGL VNAGNKKLFE
601: TELAEDDYLL FNFNDYPNGM VTLFNLLVMG NWQVWMESYK DLTGTWWSIT YFVSFYVITI LLLLNLVVAF VLEAFFTELD LEEEEKCQGQ DSQEKRNRRR
701: SAGSKSRSQR VDTLLHHMLG DELSKPECST SDT
Arabidopsis Description
TPC1AT4G03560 protein [Source:UniProtKB/TrEMBL;Acc:B9DFD5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.