CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, plasma membrane

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY21975
CDY48215
CDY48568
CDY57144
CDY61997
CDY65072

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51500.1	CDY57144	AT3G56800.1	15299147
AT1G51500.1	CDY65072	AT3G56800.1	15299147
AT1G51500.1	CDY21975	AT4G03560.1	15299147
AT1G51500.1	CDY48215	AT4G03560.1	15299147
AT1G51500.1	CDY48568	AT4G03560.1	15299147
AT1G51500.1	CDY61997	AT4G03560.1	15299147

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43913	Canola	nucleus, peroxisome, plasma membrane	98.52	96.39
AT1G51500.1	Thale cress	cytosol, peroxisome, plasma membrane	94.09	92.72
CDY06406	Canola	peroxisome	84.79	84.54
CDY18337	Canola	plasma membrane	30.28	83.0
CDY61513	Canola	golgi, mitochondrion, peroxisome, plasma membrane	76.37	82.06
KRH24076	Soybean	cytosol, peroxisome, plasma membrane	73.12	71.22
KRH29048	Soybean	cytosol, peroxisome, plasma membrane	72.82	70.53
VIT_06s0061g00230.t01	Wine grape	plasma membrane	63.96	69.61
Solyc11g065350.1.1	Tomato	cytosol, peroxisome, plasma membrane	67.8	67.3
PGSC0003DMT400077106	Potato	cytosol, peroxisome, plasma membrane	67.65	67.16
Zm00001d010426_P001	Maize	plastid	63.07	61.88
EES19248	Sorghum	cytosol, peroxisome, plasma membrane	62.78	61.77
HORVU1Hr1G030200.1	Barley	nucleus, peroxisome, plasma membrane	62.33	61.25
TraesCS1D01G126600.1	Wheat	nucleus, peroxisome, plasma membrane	62.33	61.25
TraesCS1A01G126900.1	Wheat	nucleus, peroxisome, plasma membrane	62.33	61.25
TraesCS1B01G147700.1	Wheat	nucleus, peroxisome, plasma membrane	62.33	61.25
Os05t0222200-01	Rice	nucleus, peroxisome, plasma membrane	62.48	60.43
GSMUA_Achr4P00390_001	Banana	plasma membrane	55.24	60.42
CDY49810	Canola	plasma membrane	53.77	57.78
CDY22844	Canola	plastid	53.77	57.78
CDY19179	Canola	cytosol, peroxisome, plasma membrane	50.07	50.15
CDY26211	Canola	cytosol, peroxisome, plasma membrane	49.93	50.0
CDX83888	Canola	cytosol, peroxisome, plasma membrane	49.48	49.34
CDX96749	Canola	cytosol, peroxisome, plasma membrane	49.04	49.04
GSMUA_Achr4P00380_001	Banana	plastid	53.77	43.91
CDY30512	Canola	cytosol	18.76	30.75
CDX77150	Canola	plastid	31.31	29.04
CDX71393	Canola	plastid	32.05	27.19
CDY04533	Canola	mitochondrion	32.05	26.59
CDY25855	Canola	plasma membrane	23.93	15.62
CDX71030	Canola	plasma membrane	22.01	15.6
CDY62072	Canola	endoplasmic reticulum, golgi, plasma membrane	24.52	15.59
CDY51880	Canola	plasma membrane	24.08	15.46
CDY24098	Canola	plasma membrane	24.22	15.4
CDY62076	Canola	plasma membrane	23.63	14.73
CDY24100	Canola	plasma membrane	23.63	14.73
CDY11955	Canola	plasma membrane	23.04	14.34
CDY36779	Canola	plasma membrane	22.6	14.31
CDX91328	Canola	plasma membrane	22.6	14.15
CDX74994	Canola	plasma membrane	22.6	14.15
CDY70653	Canola	extracellular, golgi, vacuole	0.59	1.13

Protein Annotations

MapMan:21.9.4.2	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	GO:A0A078DKQ6	InterPro:AAA+_ATPase	InterPro:ABC_2_trans
InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	EnsemblPlants:CDX87823	ProteinID:CDX87823	ProteinID:CDX87823.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0016020
GO:GO:0016787	GO:GO:0016887	EnsemblPlantsGene:GSBRNA2T00146977001	InterPro:IPR003439	InterPro:P-loop_NTPase	PFAM:PF00005
PFAM:PF01061	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF338	SMART:SM00382
SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI0004EE7E53	SEG:seg	:	:

Description

BnaC06g08850D

Coordinates

chrLK031852:-:350080..354081

Molecular Weight (calculated)

75076.4 Da

IEP (calculated)

9.684

GRAVY (calculated)

0.139

Length

677 amino acids

Sequence
(BLAST)

001: MELDSASNGR PSRPPPPPPA PSIGRGAYLA WEDLTVVIPN FSGGPTRRLL DGLNGYAEPG RIMAIMGPSG SGKSTLLDSL AGSLARNVIM TGNLLLNGKK
101: ARLDYGLVAY VTQEDVLMGT LTVRETITYS AHLRLSSGLT KEEVNGIVEG TIIELGLQDC ADRVIGSWQS RGVSGGERKR VSIALEILTR PQILFLDEPT
201: SGLDSASAFF VIQALRNIAR DGGRTVVSSI HQPSSEVFAL FDDLFLLSSG ETVYFGESKF AVEFFAEAGF PCPKKRNPSD HFLRCINSDF DTETPATSDP
301: LMNLATSEIK ARLVENYRRS VYAKSAKSRI RELASIVSKN FRKGSEASWF KQLRTLTKRS FVNMCRDIGY YWSRIVIYIV VSICVGTIFY DVGHSYTSIL
401: ARVSCGGFIT GFMTFMSIGG FPSFIEEMKV FYKERLSGYY GVSVYIISNY VSSFPFLVAI SGITGSITYN MVKFRPGFSH WAFFCLNIFF SVSVIESLMM
501: VVASLVPNFL MGLITGAGII GIIMMTSGFF RLLPDLPKIF WRYPISFMSY GSWAIQGAYK NDFLGLEFEP MFAGEPKMTG EEVIQKIFGV KVTHSKWWDL
601: AAIVLILVCY RILFFIVLKL KERAEPALKA LQAKRTMRSL NKRPSFRKIP SLSSLSSRRH QALHSLSSQE GLTSPIH

Best Arabidopsis Sequence Match ( AT1G51500.1 )
(BLAST)

001: MELESTSNGR RPPPPAEIGR GAYLAWEDLT VVIPNFSGGP TRRLLDGLNG HAEPGRIMAI MGPSGSGKST LLDSLAGRLA RNVIMTGNLL LNGKKARLDY
101: GLVAYVTQED ILMGTLTVRE TITYSAHLRL SSDLTKEEVN DIVEGTIIEL GLQDCADRVI GNWHSRGVSG GERKRVSVAL EILTRPQILF LDEPTSGLDS
201: ASAFFVIQAL RNIARDGGRT VVSSIHQPSS EVFALFDDLF LLSSGETVYF GESKFAVEFF AEAGFPCPKK RNPSDHFLRC INSDFDTVTA TLKGSQRIRE
301: TPATSDPLMN LATSEIKARL VENYRRSVYA KSAKSRIREL ASIEGHHGME VRKGSEATWF KQLRTLTKRS FVNMCRDIGY YWSRIVIYIV VSFCVGTIFY
401: DVGHSYTSIL ARVSCGGFIT GFMTFMSIGG FPSFIEEMKV FYKERLSGYY GVSVYIISNY VSSFPFLVAI ALITGSITYN MVKFRPGVSH WAFFCLNIFF
501: SVSVIESLMM VVASLVPNFL MGLITGAGII GIIMMTSGFF RLLPDLPKVF WRYPISFMSY GSWAIQGAYK NDFLGLEFDP MFAGEPKMTG EQVINKIFGV
601: QVTHSKWWDL SAIVLILVCY RILFFIVLKL KERAEPALKA IQAKRTMKSL KKRPSFKKVP SLSSLSSRRH QPLHSLSSQE GLTSPIN

Arabidopsis Description

ABCG12WBC12 [Source:UniProtKB/TrEMBL;Acc:A0A178W3S0]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.