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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 1
  • mitochondrion 2
  • endoplasmic reticulum 3
  • extracellular 2
  • vacuole 2
  • plasma membrane 4
  • golgi 2
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:mitochondrion, plastid, secretory
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:mitochondrion
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY62072 Canola endoplasmic reticulum, golgi, plasma membrane 95.96 95.96
Bra039669.1-P Field mustard cytosol, peroxisome, plasma membrane 94.37 88.86
CDY62076 Canola plasma membrane 85.45 83.79
CDY24100 Canola plasma membrane 85.07 83.43
CDY25855 Canola plasma membrane 78.59 80.71
CDY51880 Canola plasma membrane 79.06 79.89
AT1G53390.1 Thale cress plasma membrane 79.34 76.19
KRG91932 Soybean plasma membrane 63.66 60.81
KRH34842 Soybean plasma membrane 63.57 60.66
OQU76478 Sorghum plasma membrane 21.41 60.0
VIT_13s0019g04600.t01 Wine grape plasma membrane 62.91 59.82
CDX71030 Canola plasma membrane 53.24 59.37
KRH71703 Soybean plasma membrane 61.6 58.94
GSMUA_Achr4P12050_001 Banana mitochondrion, plasma membrane 57.18 57.83
Solyc04g025170.2.1 Tomato mitochondrion 55.31 57.75
GSMUA_Achr4P05530_001 Banana plasma membrane 54.37 57.61
HORVU6Hr1G091510.2 Barley mitochondrion 56.15 57.28
GSMUA_Achr8P14250_001 Banana plasma membrane 53.62 56.59
CDY11955 Canola plasma membrane 56.9 55.7
CDX74994 Canola plasma membrane 56.53 55.69
CDX91328 Canola plasma membrane 56.53 55.69
TraesCSU01G106900.1 Wheat plasma membrane 54.93 55.14
GSMUA_Achr11P... Banana plasma membrane 52.02 55.12
Os06t0731200-01 Rice plasma membrane 51.46 55.08
TraesCS7B01G488900.1 Wheat plasma membrane 54.37 54.57
CDY36779 Canola plasma membrane 54.46 54.26
Os11t0416900-01 Rice plasma membrane 55.87 54.04
Zm00001d046068_P001 Maize plasma membrane 52.77 54.04
HORVU7Hr1G122580.37 Barley endoplasmic reticulum, vacuole 44.41 53.93
KXG31382 Sorghum plasma membrane 55.49 53.53
Zm00001d018500_P002 Maize plasma membrane 55.31 52.97
TraesCS6B01G434900.1 Wheat plasma membrane 56.06 52.83
Os04t0194500-01 Rice plasma membrane 51.74 51.74
TraesCS6D01G380300.1 Wheat plasma membrane 56.53 50.21
Zm00001d004335_P001 Maize plasma membrane 51.17 49.82
TraesCS2A01G049700.2 Wheat plasma membrane 50.33 49.63
TraesCS2B01G060900.1 Wheat plasma membrane 50.33 49.49
TraesCS2D01G048800.1 Wheat plasma membrane 50.23 49.45
KXG25878 Sorghum plasma membrane 50.42 49.0
Zm00001d025031_P001 Maize plasma membrane 50.23 48.59
CDY70653 Canola extracellular, golgi, vacuole 16.15 48.59
TraesCS6A01G395000.2 Wheat plasma membrane, plastid 56.62 48.43
CDY26211 Canola cytosol, peroxisome, plasma membrane 15.59 24.56
CDX83888 Canola cytosol, peroxisome, plasma membrane 15.49 24.3
CDY19179 Canola cytosol, peroxisome, plasma membrane 15.4 24.26
CDX87823 Canola nucleus, peroxisome, plasma membrane 15.4 24.22
CDX96749 Canola cytosol, peroxisome, plasma membrane 15.21 23.93
CDY06406 Canola peroxisome 15.12 23.71
CDY43913 Canola nucleus, peroxisome, plasma membrane 15.31 23.55
CDY49810 Canola plasma membrane 13.8 23.33
CDY30512 Canola cytosol 8.92 23.0
CDY22844 Canola plastid 13.43 22.7
CDY61513 Canola golgi, mitochondrion, peroxisome, plasma membrane 13.05 22.06
CDX77150 Canola plastid 13.33 19.45
CDX71393 Canola plastid 13.99 18.67
CDY04533 Canola mitochondrion 13.9 18.14
CDY18337 Canola plasma membrane 2.54 10.93
Protein Annotations
MapMan:24.1.3.2.2Gene3D:3.40.50.300GO:A0A078GHK2UniProt:A0A078GHK2InterPro:AAA+_ATPaseInterPro:ABC_transporter-like
InterPro:ABC_transporter_CSEnsemblPlants:CDY24098ProteinID:CDY24098ProteinID:CDY24098.1GO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0016020GO:GO:0016021
GO:GO:0016787GO:GO:0016887EnsemblPlantsGene:GSBRNA2T00024645001InterPro:IPR003439InterPro:P-loop_NTPasePFAM:PF00005
ScanProsite:PS00211PFscan:PS50893PANTHER:PTHR19241PANTHER:PTHR19241:SF304SMART:SM00382SUPFAM:SSF52540
TMHMM:TMhelixUniParc:UPI0004EEB2ACSEG:seg:::
Description
BnaA06g00960DBnaA06g00960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GHK2]
Coordinates
chrLK032153:-:452456..457405
Molecular Weight (calculated)
118628.0 Da
IEP (calculated)
8.853
GRAVY (calculated)
-0.075
Length
1065 amino acids
Sequence
(BLAST)
0001: MKLHCLIKLL ILKMSVNRRN WLKHGYNLRL VVLVLWLVCY VGYGQFEDTN DFNNPAFTQM VYHSLYNITA ALNQELATKA KFCVKDLTAD WDKAFNFSAN
0101: LDFLRSCFNK TEGDFVSRIC TAAEMKFYSD EFLLKTDNPG YLKPKPNRNC NLTSWVPGCE PGWACSRDHL TEQDDLPERT SNCMPCCEGF FCPNGLTCMI
0201: PCPRGSYCPL ATLNETTGLC DPYAYQLPPG QLNHTCGGAN VWADHSRSDE LFCSAGYYCP TTTLKLPCGS GHYCRMGSTS KKPCFKLTSC NSNSANLHAF
0301: GILVICGVVT ILLIIYNCSD QILTTRERRQ AKSREAAVKK AKANQRWKVA RTAAKKHVTE ISEQISQTLS GKRTKKDGET HKMLDRVDSS SSPASSSSAV
0401: QPSFEIEDDA AGGSNKRPSG KRGKGPRIKN SQSQILKYAY NQIEKEKAME LENSDLTFSG IVNMATYSEM KRRTLLELSF QDLTLTLKSN GKHLLRCVTG
0501: TMKPGRITAV MGPSGAGKTS LLSALAGKAV GCNLSGLLLI NGKQLSIHSF KKIIGFVPQD DIVHGNLTVE ENIWFHARCR LPAGQSKAEK VLVVERVIDS
0601: LGLQGVRSSL VGTVEKRGIS GGQRKRVNVG LEMAMEPSIL FLDEPTSGLD SASSQLLLKA LKHEALEGVN ICMVVHQPSY TLFKTFNDLV LLAKGGLTVY
0701: HGPVENVEEY FSGLGIIVPE RINPPDYYID VLEGIVTNLN SDVSIKELPQ RWMLHEGFSV PLDMRKNDNY SAEPTFVREL LGDVTSNFRL RGDKIRHNFL
0801: KTRDLSYRRT PSMWLQYKYF LGRIAKQRMR EAKLQATDYL ILLLAGACLG SLIKQSDENF GTPGYTYTII AVSLLCKIAA LRSFSLDKVH YWRESAAGMS
0901: SLASFLAKDT IDCFNTLVKP LVYLSMFYFF TNPRSTFLDH YIVLVCLVYC VTGIAYALAI FLQPGSAQLF SVLLPVVLTL VATQSNDSKA MKTIADLCYP
1001: KWALQAFVIR NAEKYSGVWM ITRCGALMKG GYDINEWNLC IMILLLIGVA TRMIAFVGMV ILQKR
Best Arabidopsis Sequence Match ( AT1G53390.1 )
(BLAST)
0001: MNFNTSLVIM LLNLKMSVDR RNWLKHGCNL RLVILVLWLV CYVSNGQTIG DTSDFNNPAV LPLVTQMVYR SLSNSTAALN RELGIRAKFC VKDPDADWNR
0101: AFNFSSNLNF LSSCIKKTQG SIGKRICTAA EMKFYFNGFF NKTNNPGYLK PNVNCNLTSW VSGCEPGWGC SVDPTEQVDL QNSKDFPERR RNCMPCCEGF
0201: FCPRGLTCMI PCPLGAHCPL ATLNKTTSLC EPYTYQLPSG RPNHTCGGAN VWADIRSSGE VFCSAGSYCP TTTQKVPCDS GHYCRMGSTS EKPCFKLTSC
0301: NPNTANQNMH AFGIMVIAAV STILLIIYNC SDQILTTRER RQAKSREAAV KKARAHHRWK AAREAAKKHV SGIRAQITRT FSGKRANQDG DTNKMLGRGD
0401: SSEIDEAIDM STCSSPASSS AAQSSYENED HAAAGSNGRA SLGIEGKRVK GQTLAKIKKT QSQIFKYAYD RIEKEKAMEQ ENKNLTFSGI VKMATNSETR
0501: KRHLMELSFK DLTLTLKSNG KQVLRCVTGS MKPGRITAVM GPSGAGKTSL LSALAGKAVG CKLSGLILIN GKQESIHSYK KIIGFVPQDD VVHGNLTVEE
0601: NLWFHAKCRL PADLSKADKV LVVERIIDSL GLQAVRSSLV GTVEKRGISG GQRKRVNVGL EMVMEPSVLF LDEPTSGLDS ASSQLLLRAL RHEALEGVNI
0701: CMVVHQPSYT LFKTFNDLVL LAKGGLTVYH GSVNKVEEYF SGLGIHVPDR INPPDYYIDV LEGVVISMGN SGIGYKELPQ RWMLHKGYSV PLDMRNNSAA
0801: GLETNPDLGT NSPDNAEQTF ARELWRDVKS NFRLRRDKIR HNFLKSRDLS HRRTPSTWLQ YKYFLGRIAK QRMREAQLQA TDYLILLLAG ACLGSLIKAS
0901: DESFGAPGYI YTIIAVSLLC KIAALRSFSL DKLHYWRESA SGMSSSACFL AKDTIDIFNI LVKPLVYLSM FYFFTNPRST FFDNYIVLVC LVYCVTGIAY
1001: ALAIFLQPST AQLFSVLLPV VLTLVATQPK NSELIRIIAD LSYPKWALEA FVIGNAQKYY GVWMITRCGS LMKSGYDINK WSLCIMILLL VGLTTRGVAF
1101: VGMLILQKK
Arabidopsis Description
ABCG24ABC transporter G family member 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAG3]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.