Factsheet for GSMUA_Achr4P12050_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
golgi 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P05530_001	Banana	plasma membrane	85.57	89.65
OQU76478	Sorghum	plasma membrane	27.73	76.84
Os06t0731200-01	Rice	plasma membrane	67.52	71.46
HORVU6Hr1G091510.2	Barley	mitochondrion	69.23	69.83
Zm00001d046068_P001	Maize	plasma membrane	68.66	69.52
Os11t0416900-01	Rice	plasma membrane	72.46	69.3
KXG31382	Sorghum	plasma membrane	71.13	67.84
TraesCSU01G106900.1	Wheat	plasma membrane	68.0	67.48
HORVU7Hr1G122580.37	Barley	endoplasmic reticulum, vacuole	56.13	67.39
Zm00001d018500_P002	Maize	plasma membrane	71.04	67.27
TraesCS7B01G488900.1	Wheat	plasma membrane	67.71	67.2
VIT_13s0019g04600.t01	Wine grape	plasma membrane	68.85	64.73
GSMUA_Achr8P14250_001	Banana	plasma membrane	61.82	64.52
GSMUA_Achr11P...	Banana	plasma membrane	61.54	64.48
TraesCS6B01G434900.1	Wheat	plasma membrane	68.95	64.25
KRH34842	Soybean	plasma membrane	65.91	62.19
KRG91932	Soybean	plasma membrane	65.81	62.15
KRH71703	Soybean	plasma membrane	64.67	61.19
TraesCS6D01G380300.1	Wheat	plasma membrane	69.42	60.97
Solyc04g025170.2.1	Tomato	mitochondrion	58.97	60.88
CDY25855	Canola	plasma membrane	58.97	59.88
Bra038121.1-P	Field mustard	plasma membrane	59.16	59.11
TraesCS6A01G395000.2	Wheat	plasma membrane, plastid	69.33	58.63
CDY51880	Canola	plasma membrane	58.69	58.63
CDY62076	Canola	plasma membrane	59.35	57.55
CDY24100	Canola	plasma membrane	59.26	57.46
CDY62072	Canola	endoplasmic reticulum, golgi, plasma membrane	58.02	57.37
Bra039668.1-P	Field mustard	plasma membrane	59.07	57.27
AT1G53390.1	Thale cress	plasma membrane	60.3	57.26
CDY24098	Canola	plasma membrane	57.83	57.18
Bra039669.1-P	Field mustard	cytosol, peroxisome, plasma membrane	54.8	51.02
GSMUA_AchrUn_...	Banana	plasma membrane	14.15	25.08
GSMUA_Achr3P20410_001	Banana	plasma membrane	14.53	24.76
GSMUA_Achr6P02130_001	Banana	mitochondrion	13.87	24.75
GSMUA_AchrUn_...	Banana	plasma membrane	13.58	24.4
GSMUA_Achr5P10800_001	Banana	cytosol, peroxisome, plasma membrane	16.05	24.39
GSMUA_Achr6P04180_001	Banana	plasma membrane	13.3	23.69
GSMUA_Achr5P19820_001	Banana	cytosol, peroxisome, plasma membrane	14.91	23.54
GSMUA_Achr4P00390_001	Banana	plasma membrane	13.2	22.46
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plasma membrane	14.72	21.23
GSMUA_Achr10P...	Banana	plasma membrane	7.88	19.86
GSMUA_Achr4P00380_001	Banana	plastid	13.2	16.77

Protein Annotations

MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	EnsemblPlantsGene:GSMUA_Achr4G12050_001	EnsemblPlants:GSMUA_Achr4P12050_001	EnsemblPlants:GSMUA_Achr4T12050_001
InterPro:IPR003439	UniProt:M0SN70	InterPro:P-loop_NTPase	PFAM:PF00005	ScanProsite:PS00211	PFscan:PS50893
PANTHER:PTHR19241	PANTHER:PTHR19241:SF448	SMART:SM00382	SUPFAM:SSF52540	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI000294E7BD	SEG:seg	:	:	:	:

Description

ABC transporter G family member 28 [Source:GMGC_GENE;Acc:GSMUA_Achr4G12050_001]

Coordinates

chr4:+:8812028..8821198

Molecular Weight (calculated)

116696.0 Da

IEP (calculated)

9.152

GRAVY (calculated)

-0.094

Length

1053 amino acids

Sequence
(BLAST)

0001: MLAAWSRRRP RPASNITFIV IIASTAILLG RLPLGQCQDD DDYDYGSQAQ GASPLFAGVI YDRIMNLTGS FAMEMGQHLD FCVQNADKDW NEAFNFSSDL
0101: SFLSKCMKET NGDLTRRLCT AAETKFYFSS FYDNGGKKNY LRPNKNCNLT SWVSGCEPGW ACSIFEDQKV NLKDSKVVPM RSINCRPCCE GFFCPHGITC
0201: MIPCPLGAYC PLGKLNKTTG VCDPYNYQLP PGQPNHTCGS ADMWADVGTS SEIFCPAGYY CPSTIQKISC SSGYYCRKGS TTQTRCFQKS SCPPNSANQD
0301: ITIFGALLMV ALSLLLLIIY NFSGQILTSR ERKQAKSREA AARHARETVQ ARERWKTAKD VAKKHAVGLQ TQLSRTFSRK KSVRQDPPKG LGQPSKKEPS
0401: KQMHTRSQIF KYAYGQIEKE KAMQQQNKNL TFSGVISMAT DTDIRTRPMI EVAFKDLTLT LKGSKKKLLR SVTGKLMPGR VAAVMGPSGA GKTTFLNALA
0501: GKATGCATSG LVLINGKAEP IRSYKKIIGF VPQDDIVHGN LTVEENLWFS ARCRLSAELS KPDKVLVVER VIESLGLQAV RDSLVGTVEK RGISGGQRKR
0601: VNVGLEMVME PSLLILDEPT SGLDSSSSQL LLRALRREAL EGVNICMVVH QPSYTLFKMF DDLILLAKGG LTVYHGSVKK VEEYFAGLGI NVPERVNPPD
0701: YFIDILEGIV KPSTSTGVNY KELPLRWMLH NGYEVPRDML QDAGDIDASV RGGGSSPATT GSETQSIAGE VWDNVKDIVG QKRDEYEYNF SKSKDLSNRG
0801: TPGVLRQYKY FLGRVGKQRL REARIQGVDF LILCLAGVCL GTLAKVSDET FGALGYTYTV IAVSLLCKIG ALRSFSLERL QYLRERASGM SSLAYFLARD
0901: TIDHFNTIIK PIVYLSMFYF FNNPRSSILD NYIILVGLVY CVTGIAYAFA MFFQPGSAQL WSVLLPVVLT LLATQQKTSK FLANLCYTKW ALEAFVIANA
1001: ERYSGVWLVT RCGSLIKNGY NIGDWWLCIV VLVINGVVFR CIALFCMVTF QKN

Best Arabidopsis Sequence Match ( AT2G37010.1 )
(BLAST)

0001: MRVRVDVCWT QHIFLFFVFG LSFMSFALSL DGDDYSKTGN PKALVSVTNL IYTRLQNLKT VLKADVDRDL GYCIKNLKGD WNEAFNFDKN LDFLSNCVKK
0101: NDGDLTLRLC SAAEIKFYFS SFVRRDEATT VHVKPNINCN LAKWVSGCEP GWSCNADDEK RFDLNNGKIL PSRTRKCQPC CEGFFCPQGL ACMIPCPLGA
0201: YCPLAKLNKT TGFCEPYNYQ IPPGKLNHTC GSADSWVDAE SSGDMFCSPG SYCPTTIRKV TCSSGHYCRQ GSTSQKPCFK LATCNPNTAN QNIHAYGAIL
0301: IASLSLLMIM VYNCSDQVLA TREKRQAKSR EAAARHAKET TQARERWKTA KGVAKNQKMG LSAQLSQTFS RMKSARKDAT PVKASGKSKD KKKEPSNLTK
0401: MMKSMEENPS NNEGFNVGTG SKPGKKPQAP KGKQLHTQSQ IFKYAYGQIE KEKAMEQNNK NLTFSGVISM ATDTEMRTRP VIEVAFKDLT LTLKGKHKHI
0501: LRSVTGKIMP GRVSAVMGPS GAGKTTFLSA LAGKATGCTR TGLILINGRN DSINSYKKIT GFVPQDDVVH GNLTVEENLR FSARCRLSAY MSKADKVLII
0601: ERVIESLGLQ HVRDSLVGTI EKRGISGGQR KRVNVGVEMV MEPSLLILDE PTTGLDSASS QLLLRALRRE ALEGVNICMV VHQPSYTMYK MFDDMIILAK
0701: GGLTVYHGSV KKIEEYFADI GITVPDRVNP PDHYIDILEG IVKPDGDITI EQLPVRWMLH NGYPVPHDML KFCDGLPSSS TGSAQEDSTH NSFSNDLWQD
0801: VKTNVEITKD QLQHNYSNSH DNSNRVTPTV GRQYRYFVGR VGKQRLREAR LQALDFLILL VAGACLGTLA KVNDETIDTL GYTYTIIAVS LLCKISALRS
0901: FSVDKLQYWR ESAAGISSLA HFMAKDTMDH LNTIMKPLVY LSMFYFFNNP RSSFEDNYIV LVCLVYCVTG MAYIFAILYS PSAAQLLSVL VPVVMTLIAN
1001: QDKESMVLKY LGSFCYPKWT LEAFVLSNAQ RYSGVWVVTR CSSLSQNGYD LSDWILCLIV LVLMGLICRF IAYFCMVTFQ KK

Arabidopsis Description

WBC30Putative white-brown complex homolog protein 30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJK6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.