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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 4
  • cytosol 1
  • plasma membrane 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, peroxisome, plastid
BaCelLo:plastid
ChloroP:plastid
MultiLoc:cytosol
PProwler:plastid
TargetP:plastid
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra034385.1-P Field mustard plastid 90.55 95.94
CDY30512 Canola cytosol 52.05 92.01
AT2G28070.1 Thale cress plastid 91.92 91.92
CDX71393 Canola plastid 91.23 83.46
CDY04533 Canola mitochondrion 92.33 82.6
KRG89865 Soybean plastid 54.52 81.22
Solyc06g074970.1.1 Tomato plastid 65.48 79.4
VIT_06s0061g00350.t01 Wine grape plastid 77.95 78.81
KRH22852 Soybean cytosol, plastid 77.53 78.18
PGSC0003DMT400050589 Potato plastid 77.12 77.87
KRH26514 Soybean plasma membrane, plastid 76.85 77.49
Solyc11g069710.1.1 Tomato plastid 76.71 77.45
PGSC0003DMT400031312 Potato plastid 74.93 75.66
GSMUA_Achr11P... Banana cytosol, peroxisome, plasma membrane 67.53 67.53
EER90467 Sorghum cytosol, plasma membrane, plastid 62.74 63.43
TraesCS5D01G551400.1 Wheat cytosol, peroxisome, plasma membrane 62.6 63.12
HORVU5Hr1G125010.1 Barley cytosol, peroxisome, plasma membrane, plastid 62.19 62.79
TraesCS4A01G315900.1 Wheat cytosol, peroxisome, plasma membrane 62.33 62.59
Os03t0859500-01 Rice cytosol, mitochondrion, plasma membrane, plastid 60.41 61.34
Zm00001d034918_P003 Maize cytosol, nucleus, plasma membrane, plastid 62.19 42.12
CDY26211 Canola cytosol, peroxisome, plasma membrane 30.41 32.84
CDX96749 Canola cytosol, peroxisome, plasma membrane 30.41 32.79
CDX83888 Canola cytosol, peroxisome, plasma membrane 30.41 32.7
CDY19179 Canola cytosol, peroxisome, plasma membrane 30.27 32.69
CDY43913 Canola nucleus, peroxisome, plasma membrane 30.0 31.65
CDX87823 Canola nucleus, peroxisome, plasma membrane 29.04 31.31
CDY22844 Canola plastid 26.85 31.11
CDY06406 Canola peroxisome 28.77 30.93
CDY49810 Canola plasma membrane 26.3 30.48
CDY61513 Canola golgi, mitochondrion, peroxisome, plasma membrane 26.03 30.16
CDY18337 Canola plasma membrane 7.67 22.67
CDX71030 Canola plasma membrane 19.73 15.08
CDY25855 Canola plasma membrane 19.73 13.89
CDY62076 Canola plasma membrane 20.27 13.63
CDY51880 Canola plasma membrane 19.59 13.57
CDY62072 Canola endoplasmic reticulum, golgi, plasma membrane 19.73 13.52
CDY11955 Canola plasma membrane 20.14 13.51
CDY24100 Canola plasma membrane 20.0 13.44
CDY36779 Canola plasma membrane 19.59 13.38
CDY24098 Canola plasma membrane 19.45 13.33
CDX91328 Canola plasma membrane 19.32 13.04
CDX74994 Canola plasma membrane 19.32 13.04
CDY70653 Canola extracellular, golgi, vacuole 3.01 6.21
Protein Annotations
MapMan:24.1.3.2.2Gene3D:3.40.50.300GO:A0A078CJU2InterPro:AAA+_ATPaseInterPro:ABC_2_transInterPro:ABC_transporter-like
EnsemblPlants:CDX77150ProteinID:CDX77150ProteinID:CDX77150.1GO:GO:0000166GO:GO:0003674GO:GO:0003824
GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0016020GO:GO:0016787GO:GO:0016887
EnsemblPlantsGene:GSBRNA2T00127763001InterPro:IPR003439InterPro:P-loop_NTPasePFAM:PF00005PFAM:PF01061PFscan:PS50893
PANTHER:PTHR19241PANTHER:PTHR19241:SF200SMART:SM00382SUPFAM:SSF52540TMHMM:TMhelixUniParc:UPI0004EE8C76
SEG:seg:::::
Description
BnaC04g39450D
Coordinates
chrLK031809:+:1496958..1501487
Molecular Weight (calculated)
80754.2 Da
IEP (calculated)
9.239
GRAVY (calculated)
0.168
Length
730 amino acids
Sequence
(BLAST)
001: MEEIQSQSDL YRSSSSSASS PTNRVPSSHF FYVRKPGSLT QPISFEDSPE WEDSPADVRM DEEANIGGGG DSINDATATP ISPSLSKINS GSMTSPPVPE
101: GGAGNVVRKI AGASIAWKDL TVTMKGKRRY SDKVLKSSNG YALPGTMTVI MGPAKSGKST LLRALAGRLT PSAKMYGDVF VNGSKSHMPY GSYGYAERKT
201: QLIGSLTVRE FLYYSSLLQL PGFLCQKRSV VEDAIQAMSL SDYANKLIGG GHCYMKGLRS GERRRVSIAR ELVMRPHILF IDEPLYHLDS VSTLLMMVTL
301: KKLASIGCTL VFTIYQSSTE VFGLFDRICL LSNGNTLFFG ETLACLQHFS NAGFPCPIMQ SPSDHFLRAI NTDFDRIIAM CKNWQDDNGD FSAVNMDTAV
401: AIRTLEATYK SSADAASVET MIFKLTEREG SQLKSKGKAG AATRVAVLTW KSLLVMSREW KYYWLRLILY LILTLFIGTL YSGLGHSLSS VATRVAAVFV
501: FVSFASLLGI AGIPSLLKEI KIYRSEASNQ HSGAFVFILG QFLGSIPFLF LISISSSLVF YFMVGLRDDF GLLMYFVLNF FMCLLVNEGL MLSIACVWRD
601: VYWSTLTLIS VHVIMMLAAG HFRIRNALPK PLWTYPFAYI SFHTYSIQGL LENEYIGEVF AVGEVRSISG YEAIGGYYQI AADANSKWRN MLVLLAMAFG
701: YRLIVYVLLR FGLNKNVSGR LLLCHRKNNS
Best Arabidopsis Sequence Match ( AT2G28070.2 )
(BLAST)
001: MEEIQSQSDL YRSSSSSASS PTSRVPSSHF FYVRKPGSLR QPISFEDSPE WEDTPDVDLR MEDEAGGGDS INDATTTPVS PSLSKMNSGS MASPPVPEGG
101: AGTGVVRKIA GASIAWKDLT VTMKGKRKYS DKVVKSSNGY AFPGTMTVIM GPAKSGKSTL LRALAGRLPP SAKMYGEVFV NGSKSHMPYG SYGFVERETQ
201: LIGSLTVREF LYYSALLQLP GFLFQKRSVV EDAIQAMSLS DYANKLIGGH CYMKGLRSGE RRRVSIAREL VMRPHILFID EPLYHLDSVS ALLMMVTLKK
301: LASMGCTLVF TIYQSSTEVF GLFDRICLLS NGNTLFFGET LACLQHFSNA GFPCPIMQSP SDHFLRAINT DFDRIIAMCK NWQDDNGDFS AVNMDTAVAI
401: RTLEATYKSS ADADSVEAMI IKLTEREGTQ LKSKGKAGAA TRVAVLTWRS LLVMSREWKY YWLRLILYMI LTLSIGTLYS GLGHSLSSVA TRVAAVFVFV
501: SFASLLGIAG IPSLLKEIKI YRSEASNQHS GAFVFLLGQF LGSIPFLFLM SISSSLVFYF MVGLRDDFSL LMYFVLNFFM CLLVNEGLML FIACIWRDVY
601: WSTLTLISVH VIMMLAAGHF RIRTALPKPV WTYPFAYISF HTYSIEGLLE NEYLGEVFAV GEVRSISGYQ AIQGNYQISP DTNAKWRNML VLLAMAFGYR
701: LLVYVLLRFG LNKNVSGRLL LSHKKNNSSR
Arabidopsis Description
ABCG3ABC transporter G family member 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUU9]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.