Factsheet for PGSC0003DMT400050589

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
plasma membrane 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g069710.1.1	Tomato	plastid	98.34	98.34
VIT_06s0061g00350.t01	Wine grape	plastid	85.48	85.6
KRG89865	Soybean	plastid	57.95	85.51
PGSC0003DMT400031312	Potato	plastid	85.48	85.48
KRH26514	Soybean	plasma membrane, plastid	82.99	82.87
KRH22852	Soybean	cytosol, plastid	82.99	82.87
CDY30512	Canola	cytosol	46.75	81.84
AT2G28070.1	Thale cress	plastid	79.39	78.63
CDX77150	Canola	plastid	77.87	77.12
Bra011981.1-P	Field mustard	plastid	77.59	76.64
Bra034385.1-P	Field mustard	plastid	73.03	76.63
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plasma membrane	72.75	72.05
CDX71393	Canola	plastid	77.73	70.43
CDY04533	Canola	mitochondrion	78.01	69.12
EER90467	Sorghum	cytosol, plasma membrane, plastid	64.73	64.82
TraesCS5D01G551400.1	Wheat	cytosol, peroxisome, plasma membrane	64.04	63.95
HORVU5Hr1G125010.1	Barley	cytosol, peroxisome, plasma membrane, plastid	63.35	63.35
Os03t0859500-01	Rice	cytosol, mitochondrion, plasma membrane, plastid	62.79	63.14
TraesCS4A01G315900.1	Wheat	cytosol, peroxisome, plasma membrane	63.21	62.86
Zm00001d034918_P003	Maize	cytosol, nucleus, plasma membrane, plastid	65.01	43.6
PGSC0003DMT400032669	Potato	mitochondrion	5.81	37.5
PGSC0003DMT400041814	Potato	cytosol, peroxisome, plasma membrane	32.64	36.59
PGSC0003DMT400032670	Potato	cytosol, peroxisome, plasma membrane	30.57	35.14
PGSC0003DMT400039496	Potato	cytosol, peroxisome, plasma membrane	34.02	34.79
PGSC0003DMT400069337	Potato	cytosol, peroxisome, plastid	30.98	34.15
PGSC0003DMT400043270	Potato	cytosol	30.29	33.59
PGSC0003DMT400077106	Potato	cytosol, peroxisome, plasma membrane	31.12	32.99
PGSC0003DMT400069344	Potato	plasma membrane	12.31	31.56
PGSC0003DMT400031316	Potato	mitochondrion, plastid	21.99	14.83

Protein Annotations

EntrezGene:102598004	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans	InterPro:ABC_transporter-like
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439	UniProt:M1BQK9
InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061	EnsemblPlantsGene:PGSC0003DMG400019662	PGSC:PGSC0003DMG400019662	EnsemblPlants:PGSC0003DMT400050589
PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF447	SMART:SM00382	SUPFAM:SSF52540	TMHMM:TMhelix
UniParc:UPI000296A9FA	RefSeq:XP_006340222.1	SEG:seg	:	:	:

Description

ATP-binding cassette transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400019662]

Coordinates

chr11:+:41995338..42005884

Molecular Weight (calculated)

80514.2 Da

IEP (calculated)

8.784

GRAVY (calculated)

0.244

Length

723 amino acids

Sequence
(BLAST)

001: MEEIQSQSDH YRSSSSSASS PASRVPSSNF FYLRKPGSLR QPISFEDSPD WEDTDIEVRV DEGGDSINAA TTPASPSLSK LNSGSLPSPP LPDGAVITRK
101: IAGASIAWKD LTVTIKGKRK YSDKVVKSSN GYALPGTMTV IMGPAKSGKS TLLRALSGRL PDSARMYGEV FVNGTKMCMP YGSYGFVDRE TTLIGTLTVR
201: EFLYYSALLQ LPGFLCQKRS VVEDAIDSMS LGDYANKLIG GHCYMKGLRS GERRRVSIAR ELVMRPHILF IDEPLYRLDS VSTLLMMVTL KKLASTGCTL
301: IFTIYQSSTE VFGLFDRICL LSNGNTLFFG ETLACLQHFS NAGFPCPIMQ SPSDHFLRAI NTEFDRIIAM CKSWQDDHGD LSAVNMDTAV AIRTLEATYK
401: SSADAVSLET MIVKLTEKEG PSLKSKGMVG NLTRVAVLTW RSLLIMSREW KYYWLRLILY MLLALCIGTV FSGLGHTLSS VVTRVAAIFV FVSFTSLLSI
501: AGVPAQMKEI KIYACEESNQ HSGAFIFLLG QLFASIPFLF LISISSSLVF YFLVGLRDEF SMLIYFVLNF FTCLLVNEGL VLAVTSIWQD IFWSILIFVS
601: IQVIMMLSAG FLRIRSSLPG PVWMYPISYI AFHTYSIQGL LENEYIETSF AVGQVRTISG NQALQNVYDI SADSNSKWKN LLVLFLMAVA YRVLVFVLLK
701: FYVRKNLFVP KLFLCNQNTR NSR

Best Arabidopsis Sequence Match ( AT2G28070.2 )
(BLAST)

001: MEEIQSQSDL YRSSSSSASS PTSRVPSSHF FYVRKPGSLR QPISFEDSPE WEDTPDVDLR MEDEAGGGDS INDATTTPVS PSLSKMNSGS MASPPVPEGG
101: AGTGVVRKIA GASIAWKDLT VTMKGKRKYS DKVVKSSNGY AFPGTMTVIM GPAKSGKSTL LRALAGRLPP SAKMYGEVFV NGSKSHMPYG SYGFVERETQ
201: LIGSLTVREF LYYSALLQLP GFLFQKRSVV EDAIQAMSLS DYANKLIGGH CYMKGLRSGE RRRVSIAREL VMRPHILFID EPLYHLDSVS ALLMMVTLKK
301: LASMGCTLVF TIYQSSTEVF GLFDRICLLS NGNTLFFGET LACLQHFSNA GFPCPIMQSP SDHFLRAINT DFDRIIAMCK NWQDDNGDFS AVNMDTAVAI
401: RTLEATYKSS ADADSVEAMI IKLTEREGTQ LKSKGKAGAA TRVAVLTWRS LLVMSREWKY YWLRLILYMI LTLSIGTLYS GLGHSLSSVA TRVAAVFVFV
501: SFASLLGIAG IPSLLKEIKI YRSEASNQHS GAFVFLLGQF LGSIPFLFLM SISSSLVFYF MVGLRDDFSL LMYFVLNFFM CLLVNEGLML FIACIWRDVY
601: WSTLTLISVH VIMMLAAGHF RIRTALPKPV WTYPFAYISF HTYSIEGLLE NEYLGEVFAV GEVRSISGYQ AIQGNYQISP DTNAKWRNML VLLAMAFGYR
701: LLVYVLLRFG LNKNVSGRLL LSHKKNNSSR

Arabidopsis Description

ABCG3ABC transporter G family member 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUU9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.