Factsheet for PGSC0003DMT400032669

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0009g00530.t01	Wine grape	mitochondrion	56.25	33.87
PGSC0003DMT400032670	Potato	cytosol, peroxisome, plasma membrane	88.39	15.74
PGSC0003DMT400041814	Potato	cytosol, peroxisome, plasma membrane	71.43	12.4
PGSC0003DMT400043270	Potato	cytosol	70.54	12.12
KRH42129	Soybean	cytosol, peroxisome, plasma membrane	68.75	11.36
KRH18182	Soybean	cytosol	67.86	11.24
PGSC0003DMT400069337	Potato	cytosol, peroxisome, plastid	54.46	9.3
PGSC0003DMT400039496	Potato	cytosol, peroxisome, plasma membrane	53.57	8.49
PGSC0003DMT400077106	Potato	cytosol, peroxisome, plasma membrane	48.21	7.92
PGSC0003DMT400050589	Potato	plastid	37.5	5.81
PGSC0003DMT400031312	Potato	plastid	35.71	5.53
PGSC0003DMT400031316	Potato	mitochondrion, plastid	29.46	3.08
PGSC0003DMT400069344	Potato	plasma membrane	0.0	0.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:ABC_transporter-like	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439	UniProt:M1AXT1
InterPro:P-loop_NTPase	PFAM:PF00005	EnsemblPlantsGene:PGSC0003DMG400012546	PGSC:PGSC0003DMG400012546	EnsemblPlants:PGSC0003DMT400032669	PANTHER:PTHR19241
PANTHER:PTHR19241:SF229	SUPFAM:SSF52540	UniParc:UPI000296530B	SEG:seg	:	:

Description

White-brown-complex ABC transporter family [Source:PGSC_GENE;Acc:PGSC0003DMG400012546]

Coordinates

chr1:-:82110286..82112155

Molecular Weight (calculated)

12194.6 Da

IEP (calculated)

10.229

GRAVY (calculated)

-0.629

Length

112 amino acids

Sequence
(BLAST)

001: MSSGRLGSNT RQSGNILING RRQTLAYGSS AYVTQEDTLM ATLTVKEAVY YSAELQLPNS MPKSEKKQIA DMTLKEMGLQ DAMETRIGGW SGKGISGGQK
101: RRDFNAPKTS LS

Best Arabidopsis Sequence Match ( AT1G17840.1 )
(BLAST)

001: MEIEASRQQT TVPVSVGGGN FPVGGLSPLS EAIWREKAPT EFVGDVSARL TWQDLTVMVT MGDGETQNVL EGLTGYAEPG SLTALMGPSG SGKSTMLDAL
101: ASRLAANAFL SGTVLLNGRK TKLSFGTAAY VTQDDNLIGT LTVRETIWYS ARVRLPDKML RSEKRALVER TIIEMGLQDC ADTVIGNWHL RGISGGEKRR
201: VSIALEILMR PRLLFLDEPT SGLDSASAFF VTQTLRALSR DGRTVIASIH QPSSEVFELF DRLYLLSGGK TVYFGQASDA YEFFAQAGFP CPALRNPSDH
301: FLRCINSDFD KVRATLKGSM KLRFEASDDP LEKITTAEAI RLLVDYYHTS DYYYTAKAKV EEISQFKGTI LDSGGSQASF LLQTYTLTKR SFINMSRDFG
401: YYWLRLLIYI LVTVCIGTIY LNVGTSYSAI LARGSCASFV FGFVTFMSIG GFPSFVEDMK VFQRERLNGH YGVAAFVIAN TLSATPFLIM ITFISGTICY
501: FMVGLHPGFT HYLFFVLCLY ASVTVVESLM MAIASIVPNF LMGIIIGAGI QGIFMLVSGF FRLPNDIPKP FWRYPMSYIS FHFWALQGQY QNDLRGLTFD
601: SQGSAFKIPG EYVLENVFQI DLHRSKWINL SVILSMIIIY RIIFFIMIKT NEDVTPWVRG YIARRRMKQK NGTQNTTVAP DGLTQSPSLR NYIATRTDGA
701: RRW

Arabidopsis Description

ABCG11ABC transporter G family member 11 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXN0]
SUBAcon: [cytosol,plasma membrane,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.