Factsheet for PGSC0003DMT400069337

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 2
plasma membrane 1
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g072100.1.1	Tomato	cytosol, peroxisome, plasma membrane	93.29	85.59
PGSC0003DMT400069344	Potato	plasma membrane	34.76	80.85
PGSC0003DMT400039496	Potato	cytosol, peroxisome, plasma membrane	77.59	71.99
GSMUA_Achr5P10800_001	Banana	cytosol, peroxisome, plasma membrane	71.04	67.24
GSMUA_Achr5P19820_001	Banana	cytosol, peroxisome, plasma membrane	67.23	66.12
TraesCS1B01G181300.2	Wheat	cytosol, peroxisome, plasma membrane	69.66	63.83
TraesCS1D01G161500.2	Wheat	cytosol, peroxisome, plasma membrane	69.21	63.41
Os04t0528300-01	Rice	plasma membrane	67.84	62.59
Os10t0494300-01	Rice	extracellular, plasma membrane	68.9	62.52
KXG38261	Sorghum	cytosol, peroxisome, plasma membrane	67.84	62.32
Zm00001d002871_P001	Maize	cytosol, peroxisome, plasma membrane	68.29	62.14
Zm00001d013960_P001	Maize	cytosol, peroxisome, plasma membrane	66.92	61.83
TraesCSU01G020100.1	Wheat	plasma membrane	66.77	61.17
TraesCS2A01G374100.1	Wheat	plasma membrane	66.62	60.86
TraesCS1A01G164500.1	Wheat	cytosol	61.89	59.18
Zm00001d032601_P002	Maize	cytosol, peroxisome, plasma membrane	64.94	57.88
HORVU2Hr1G090960.2	Barley	cytosol	66.46	57.67
OQU82009	Sorghum	mitochondrion	68.14	57.31
TraesCS2D01G370400.2	Wheat	plastid	66.46	56.19
TraesCS1D01G150800.1	Wheat	cytosol, peroxisome, plasma membrane	61.28	55.83
PGSC0003DMT400032669	Potato	mitochondrion	9.3	54.46
PGSC0003DMT400077106	Potato	cytosol, peroxisome, plasma membrane	50.76	48.83
PGSC0003DMT400041814	Potato	cytosol, peroxisome, plasma membrane	46.49	47.29
PGSC0003DMT400032670	Potato	cytosol, peroxisome, plasma membrane	44.97	46.9
PGSC0003DMT400043270	Potato	cytosol	42.23	42.48
PGSC0003DMT400050589	Potato	plastid	34.15	30.98
PGSC0003DMT400031312	Potato	plastid	33.84	30.71
PGSC0003DMT400031316	Potato	mitochondrion, plastid	23.17	14.18

Protein Annotations

MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439
UniProt:M1CKB5	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061	EnsemblPlantsGene:PGSC0003DMG400026971	PGSC:PGSC0003DMG400026971
EnsemblPlants:PGSC0003DMT400069337	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF271	SMART:SM00382
SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI0002968494	SEG:seg	:	:

Description

White-brown-complex ABC transporter family [Source:PGSC_GENE;Acc:PGSC0003DMG400026971]

Coordinates

chr6:-:52893988..52897879

Molecular Weight (calculated)

73693.9 Da

IEP (calculated)

7.815

GRAVY (calculated)

0.064

Length

656 amino acids

Sequence
(BLAST)

001: MRNSLSSFSS VITSSNDDVI TEIEEANEPQ GHNGIVVYAH VAWKNVNVMV TLNNGDTRNI LEGLTGYAEP GTFTALMGPS GSGKSTLLDA LSGRLASNAI
101: LSGKILLNGR KAKLSFGTAA YVTQDDTLIG TLTVRETIYY SAQLRLPDRM PVSEKRTLVE STIVDMGLQD CADTFIGNWH LRGISGGEKR RVSIALEILM
201: RPRLLFLDEP TSGLDSASAF FVTQTLRCLS RDGRTVIASI HQPSSEVFEL FDRLYLLSGG KTVYFGQASE ANQARYTSLT QDSPSFYFLM LETYNEAGFP
301: CPSFRNPSDH FLRCSNSDFD KVMTTLADSI KSDQYNDDPL NKMTTVEAIR SLVDFYRRSQ YCYLANEQVE EMSKVKGAVL DSNGSQASFF MQSYILTKRS
401: FVNMTRDFGY YWLRLVIYLV VSVCVGTIYF NVGTTYNSIQ VFQRERMNGH YGVIAFVISN TLSAMPFLIL IATLSGTVCY LMVRFHPGFS HYLFFVLALY
501: ASITTVESLM MVIASVVPNF LMGIVIGAGI LGISMVVSGF FRLPHDIPKP VWRYPVSYLT FDFWAIQGQY KNHLKGLVFD NQSPDLPKIT GEYALKQTFQ
601: IHVERSKWVD LSVIFSMIII YRVIFFIMIK INEDVTPWLR GYIARRKMQQ NGANQN

Best Arabidopsis Sequence Match ( AT1G17840.1 )
(BLAST)

001: MEIEASRQQT TVPVSVGGGN FPVGGLSPLS EAIWREKAPT EFVGDVSARL TWQDLTVMVT MGDGETQNVL EGLTGYAEPG SLTALMGPSG SGKSTMLDAL
101: ASRLAANAFL SGTVLLNGRK TKLSFGTAAY VTQDDNLIGT LTVRETIWYS ARVRLPDKML RSEKRALVER TIIEMGLQDC ADTVIGNWHL RGISGGEKRR
201: VSIALEILMR PRLLFLDEPT SGLDSASAFF VTQTLRALSR DGRTVIASIH QPSSEVFELF DRLYLLSGGK TVYFGQASDA YEFFAQAGFP CPALRNPSDH
301: FLRCINSDFD KVRATLKGSM KLRFEASDDP LEKITTAEAI RLLVDYYHTS DYYYTAKAKV EEISQFKGTI LDSGGSQASF LLQTYTLTKR SFINMSRDFG
401: YYWLRLLIYI LVTVCIGTIY LNVGTSYSAI LARGSCASFV FGFVTFMSIG GFPSFVEDMK VFQRERLNGH YGVAAFVIAN TLSATPFLIM ITFISGTICY
501: FMVGLHPGFT HYLFFVLCLY ASVTVVESLM MAIASIVPNF LMGIIIGAGI QGIFMLVSGF FRLPNDIPKP FWRYPMSYIS FHFWALQGQY QNDLRGLTFD
601: SQGSAFKIPG EYVLENVFQI DLHRSKWINL SVILSMIIIY RIIFFIMIKT NEDVTPWVRG YIARRRMKQK NGTQNTTVAP DGLTQSPSLR NYIATRTDGA
701: RRW

Arabidopsis Description

ABCG11ABC transporter G family member 11 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXN0]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.