Factsheet for PGSC0003DMT400031316

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 3
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g075020.2.1	Tomato	plasma membrane	98.23	96.25
CDX71030	Canola	plasma membrane	57.84	64.92
VIT_06s0004g02490.t01	Wine grape	plasma membrane	65.39	63.79
KRH25067	Soybean	plasma membrane	64.83	63.7
KRH30616	Soybean	plasma membrane	64.65	63.11
CDY11955	Canola	plasma membrane	63.62	62.68
AT5G60740.1	Thale cress	plasma membrane	64.37	62.22
CDY36779	Canola	plasma membrane	60.26	60.43
Bra028945.1-P	Field mustard	plasma membrane	62.59	58.5
PGSC0003DMT400032669	Potato	mitochondrion	3.08	29.46
PGSC0003DMT400041814	Potato	cytosol, peroxisome, plasma membrane	14.65	24.34
PGSC0003DMT400039496	Potato	cytosol, peroxisome, plasma membrane	15.67	23.76
PGSC0003DMT400032670	Potato	cytosol, peroxisome, plasma membrane	13.9	23.69
PGSC0003DMT400077106	Potato	cytosol, peroxisome, plasma membrane	14.83	23.31
PGSC0003DMT400069337	Potato	cytosol, peroxisome, plastid	14.18	23.17
PGSC0003DMT400043270	Potato	cytosol	13.62	22.39
PGSC0003DMT400031312	Potato	plastid	14.93	22.13
PGSC0003DMT400050589	Potato	plastid	14.83	21.99
PGSC0003DMT400069344	Potato	plasma membrane	4.29	16.31

Protein Annotations

MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439	UniProt:M1AVH9	InterPro:P-loop_NTPase
PFAM:PF00005	EnsemblPlantsGene:PGSC0003DMG400012001	PGSC:PGSC0003DMG400012001	EnsemblPlants:PGSC0003DMT400031316	ScanProsite:PS00211	PFscan:PS50893
PANTHER:PTHR19241	PANTHER:PTHR19241:SF445	SMART:SM00382	SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI0002956F43
SEG:seg	:	:	:	:	:

Description

White-brown-complex ABC transporter family [Source:PGSC_GENE;Acc:PGSC0003DMG400012001]

Coordinates

chr6:+:55574774..55583712

Molecular Weight (calculated)

118764.0 Da

IEP (calculated)

8.638

GRAVY (calculated)

-0.221

Length

1072 amino acids

Sequence
(BLAST)

0001: MANLGAGQQT TGNNSMGMQL LKGALASRVK NLTTTMTKNM KGQLDFCIEN VDAEWDAAFN FSDNSDYLQG CLKQTKGDVQ QRLCTASEIK FYSVSLLEAT
0101: DESGVAKSSH YLRPNRNCNL TSWNSGCEPG WACSAGKDTK VDFENEKEIP SRVLDCQSCC EGFYCPYGLT CMIPCPMGAY CPHAKLNTTT GVCDPYRYQL
0201: PNGMDNHTCG GADVWADFVS ATELFCSAGF YCPSTVQKNP CTKGHYCRAG STEQTSCYRF ATCERQTANQ NITFYGLMFF GAIMLVLLII YNCSDQVLSS
0301: RERKQAKSRE AGARSARESA QAQNKWKSNL ASMGSQLSKT FSRRKSTRQD MQKDSDPSRP GKDSGLPLPP GMSQAKAKKQ HNLKKMINES EDSQPDSEGS
0401: NIETGDKKFK KDKGKQLHSR TQIFRYAYGQ IEKEKAMQEQ NKDMTFSGVI NMASEFEIRP RPPIEIHFKD LTLTLKGKNK HLLRCVTGTL SPGRVSAVMG
0501: PSGAGKTTFL SALTGKAAAG CTTTGSILIN GKSDSIQSYK RVIGYVPQDD IVHGNLTVEE NLWFSARCRL AADLAKPEKV LVVERVIESL GLQQVRDSLV
0601: GTVEKRGISG GQRKRVNVGL EMVIEPSLLI LDEPTSGLDS SSSQLLLRAL RREALEGVNI CMVVHQPSYT LFRMFDDFIL LAKGGLTAYH GPVSKVEEYF
0701: SGIGINIPDR VNPPDHFIDI LEGIYKLPAS IGVSYKDLPL KWMLHNGYQV PPDMLGPSGS AASSAGDNSS HGGSLAAVGT EQSFVGELWS DLKSNVVQNK
0801: DHIQHRLLPS KDLSNRKTAG YLLQYRYFLG RLGKQRLREA RIQSVDYLIL LLAGICLGTI AKVSDESFGA QGYLYTVIAV SLLGKIAALR SFSLDKVYYW
0901: RESASGMSSL AYFMAKDTLD HFSTIVKPAV YLSMFYFFNN PRSTIWDNYL VLLCLTYCIT GIAYCMAIYF EPGPAQLWSV LLPVVLTLIA KQDDDPLTAK
1001: IGNYCYPKWA LEAFLLATAR RYSGVWLISR CGLLKSRRYD LGDWYPCLIK LILVGFLSRF VAFFCLVMFH KK

Best Arabidopsis Sequence Match ( AT5G60740.1 )
(BLAST)

0001: MGRRNSYFPG NFVPLFFVFI VLILQQERVI CQEDRSLDNP AANRLYNQFV FDKISNLTEV FEDDIKRELG FCITNVKEDY NEAFNFSTKP DFLNACGKTT
0101: KGDMMQRICT AAEVRIYFNG LLGGAKRATN YLKPNKNCNL SSWMSGCEPG WACRTAKDVK VDLKDDKNVP VRTQQCAPCC AGFFCPRGIT CMIPCPLGAY
0201: CPEANLNRTT GLCDPYHYQL PSGQPNHTCG GADIWADIGS SSEVFCSAGS FCPSTIDKLP CTKGHYCRTG STAELNCFKL ATCNPRSTNQ NITAYGIMLF
0301: AGLGFLLIIL YNCSDQVLAT RERRQAKSRE KAVQSVRDSQ SREKWKSAKD IAKKHATELQ QSFSRTFSRR KSMKQPDLMR GLSQAKPGSD AALPPMLGSS
0401: SDTKKGKKKE KNKLTEMLHD IEQNPEDPEG FNLEIGDKNI KKHAPKGKAL HTQSQMFRYA YGQIEKEKAM QEQNKNLTFS GVISMANDID IRKRPMIEVA
0501: FKDLSITLKG KNKHLMRCVT GKLSPGRVSA VMGPSGAGKT TFLTALTGKA PGCIMTGMIL VNGKVESIQS YKKIIGFVPQ DDIVHGNLTV EENLWFSARC
0601: RLPADLPKPE KVLVVERVIE SLGLQHVRDS LVGTVEKRGI SGGQRKRVNV GLEMVMEPSL LILDEPTSGL DSSSSQLLLR ALRREALEGV NICMVVHQPS
0701: YTLFRMFDDL ILLAKGGLIC YQGPVKKVEE YFSSLGIVVP ERVNPPDYYI DILEGILKPS TSSGVTYKQL PVRWMLHNGY PVPMDMLKSI EGMASSASGE
0801: NSAHGGSAHG SVVGDDGTSF AGEFWQDVKA NVEIKKDNLQ NNFSSSGDLS EREVPGVYQQ YRYFLGRLGK QRLREARTLA VDYLILLLAG ICLGTLAKVS
0901: DETFGAMGYT YTVIAVSLLC KITALRSFSL DKLHYWRESR AGMSSLAYFL AKDTVDHFNT IVKPLVYLSM FYFFNNPRST VTDNYVVLIC LVYCVTGIAY
1001: TLAILFEPGP AQLWSVLLPV VLTLIATSTN DNKIVDSISE LCYTRWALEA FVVSNAQRYK GVWLITRCGS LMENGYNIKH FPRCLVFLTL TGILSRCAAF
1101: FCMVTFQKK

Arabidopsis Description

ABCG28ABC transporter G family member 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9FF46]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.