Factsheet for AT5G60740.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11955	Canola	plasma membrane	92.88	94.67
CDX71030	Canola	plasma membrane	81.06	94.14
Bra028945.1-P	Field mustard	plasma membrane	91.07	88.06
CDY36779	Canola	plasma membrane	84.67	87.84
KRH25067	Soybean	plasma membrane	70.6	71.77
KRH30616	Soybean	plasma membrane	70.69	71.4
VIT_06s0004g02490.t01	Wine grape	plasma membrane	68.8	69.43
Solyc11g069820.1.1	Tomato	plasma membrane	65.28	66.24
PGSC0003DMT400031316	Potato	mitochondrion, plastid	62.22	64.37
Solyc06g075020.2.1	Tomato	plasma membrane	61.86	62.71
AT2G37010.1	Thale cress	plasma membrane	60.6	62.11
AT1G53390.1	Thale cress	plasma membrane	57.35	57.35
AT1G17840.1	Thale cress	cytosol, peroxisome, plasma membrane	14.97	23.61
AT1G51500.1	Thale cress	cytosol, peroxisome, plasma membrane	14.34	23.14
AT1G51460.1	Thale cress	plasma membrane	14.07	23.01
AT3G21090.1	Thale cress	cytosol, peroxisome, plasma membrane	13.8	22.14
AT2G28070.1	Thale cress	plastid	13.44	20.41
AT3G21080.1	Thale cress	cytosol, peroxisome, plasma membrane	3.61	15.69

Protein Annotations

MapMan:24.1.3.2.2	Gene3D:3.40.50.300	EntrezGene:836195	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS
ProteinID:AED97372.1	ArrayExpress:AT5G60740	EnsemblPlantsGene:AT5G60740	RefSeq:AT5G60740	TAIR:AT5G60740	RefSeq:AT5G60740-TAIR-G
EnsemblPlants:AT5G60740.1	TAIR:AT5G60740.1	ProteinID:BAB09847.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439	RefSeq:NP_200882.4	InterPro:P-loop_NTPase
PFAM:PF00005	PO:PO:0001016	PO:PO:0001017	PO:PO:0001185	PO:PO:0007611	PO:PO:0007616
PO:PO:0009009	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046
PO:PO:0020030	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	ScanProsite:PS00211	PFscan:PS50893
PANTHER:PTHR19241	PANTHER:PTHR19241:SF435	UniProt:Q9FF46	SMART:SM00382	SUPFAM:SSF52540	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI000009F271	SEG:seg	:	:	:

Description

ABCG28ABC transporter G family member 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9FF46]

Coordinates

chr5:-:24425455..24430413

Molecular Weight (calculated)

123348.0 Da

IEP (calculated)

8.772

GRAVY (calculated)

-0.165

Length

1109 amino acids

Sequence
(BLAST)

0001: MGRRNSYFPG NFVPLFFVFI VLILQQERVI CQEDRSLDNP AANRLYNQFV FDKISNLTEV FEDDIKRELG FCITNVKEDY NEAFNFSTKP DFLNACGKTT
0101: KGDMMQRICT AAEVRIYFNG LLGGAKRATN YLKPNKNCNL SSWMSGCEPG WACRTAKDVK VDLKDDKNVP VRTQQCAPCC AGFFCPRGIT CMIPCPLGAY
0201: CPEANLNRTT GLCDPYHYQL PSGQPNHTCG GADIWADIGS SSEVFCSAGS FCPSTIDKLP CTKGHYCRTG STAELNCFKL ATCNPRSTNQ NITAYGIMLF
0301: AGLGFLLIIL YNCSDQVLAT RERRQAKSRE KAVQSVRDSQ SREKWKSAKD IAKKHATELQ QSFSRTFSRR KSMKQPDLMR GLSQAKPGSD AALPPMLGSS
0401: SDTKKGKKKE KNKLTEMLHD IEQNPEDPEG FNLEIGDKNI KKHAPKGKAL HTQSQMFRYA YGQIEKEKAM QEQNKNLTFS GVISMANDID IRKRPMIEVA
0501: FKDLSITLKG KNKHLMRCVT GKLSPGRVSA VMGPSGAGKT TFLTALTGKA PGCIMTGMIL VNGKVESIQS YKKIIGFVPQ DDIVHGNLTV EENLWFSARC
0601: RLPADLPKPE KVLVVERVIE SLGLQHVRDS LVGTVEKRGI SGGQRKRVNV GLEMVMEPSL LILDEPTSGL DSSSSQLLLR ALRREALEGV NICMVVHQPS
0701: YTLFRMFDDL ILLAKGGLIC YQGPVKKVEE YFSSLGIVVP ERVNPPDYYI DILEGILKPS TSSGVTYKQL PVRWMLHNGY PVPMDMLKSI EGMASSASGE
0801: NSAHGGSAHG SVVGDDGTSF AGEFWQDVKA NVEIKKDNLQ NNFSSSGDLS EREVPGVYQQ YRYFLGRLGK QRLREARTLA VDYLILLLAG ICLGTLAKVS
0901: DETFGAMGYT YTVIAVSLLC KITALRSFSL DKLHYWRESR AGMSSLAYFL AKDTVDHFNT IVKPLVYLSM FYFFNNPRST VTDNYVVLIC LVYCVTGIAY
1001: TLAILFEPGP AQLWSVLLPV VLTLIATSTN DNKIVDSISE LCYTRWALEA FVVSNAQRYK GVWLITRCGS LMENGYNIKH FPRCLVFLTL TGILSRCAAF
1101: FCMVTFQKK

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.