Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- mitochondrion 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49810 | Canola | plasma membrane | 82.15 | 88.41 |
| Bra018911.1-P | Field mustard | plastid | 82.01 | 88.25 |
| CDY22844 | Canola | plastid | 81.86 | 88.1 |
| VIT_06s0061g00260.t01 | Wine grape | cytosol | 65.19 | 64.81 |
| KRH24072 | Soybean | cytosol, peroxisome, plasma membrane | 63.27 | 62.35 |
| KRH29043 | Soybean | cytosol, peroxisome, plasma membrane | 62.83 | 61.56 |
| AT3G21090.1 | Thale cress | cytosol, peroxisome, plasma membrane | 60.77 | 59.62 |
| Solyc11g065360.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 60.03 | 59.16 |
| AT1G51500.1 | Thale cress | cytosol, peroxisome, plasma membrane | 59.88 | 59.1 |
| GSMUA_Achr4P00390_001 | Banana | plasma membrane | 52.36 | 57.35 |
| Zm00001d010426_P001 | Maize | plastid | 57.23 | 56.23 |
| EES19248 | Sorghum | cytosol, peroxisome, plasma membrane | 56.78 | 55.96 |
| TraesCS1A01G126900.1 | Wheat | nucleus, peroxisome, plasma membrane | 56.64 | 55.73 |
| TraesCS1B01G147700.1 | Wheat | nucleus, peroxisome, plasma membrane | 56.64 | 55.73 |
| TraesCS1D01G126600.1 | Wheat | nucleus, peroxisome, plasma membrane | 56.64 | 55.73 |
| HORVU1Hr1G030200.1 | Barley | nucleus, peroxisome, plasma membrane | 56.49 | 55.59 |
| Os05t0222200-01 | Rice | nucleus, peroxisome, plasma membrane | 56.19 | 54.43 |
| AT1G17840.1 | Thale cress | cytosol, peroxisome, plasma membrane | 49.41 | 47.65 |
| GSMUA_Achr4P00380_001 | Banana | plastid | 51.62 | 42.22 |
| AT3G21080.1 | Thale cress | cytosol, peroxisome, plasma membrane | 11.36 | 30.2 |
| AT2G28070.1 | Thale cress | plastid | 30.83 | 28.63 |
| AT5G60740.1 | Thale cress | plasma membrane | 23.01 | 14.07 |
| AT1G53390.1 | Thale cress | plasma membrane | 22.86 | 13.98 |
| AT2G37010.1 | Thale cress | plasma membrane | 21.68 | 13.59 |
Protein Annotations
| MapMan:21.9.4.2 | MapMan:24.1.3.2.2 | Gene3D:3.40.50.300 | EntrezGene:841571 | InterPro:AAA+_ATPase | ProteinID:AAG52631.1 |
| InterPro:ABC_2_trans | InterPro:ABC_transporter-like | InterPro:ABC_transporter_CS | ProteinID:AEE32670.1 | EMBL:AK118438 | ArrayExpress:AT1G51460 |
| EnsemblPlantsGene:AT1G51460 | RefSeq:AT1G51460 | TAIR:AT1G51460 | RefSeq:AT1G51460-TAIR-G | EnsemblPlants:AT1G51460.1 | TAIR:AT1G51460.1 |
| Unigene:At.37812 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005215 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0006950 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009506 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016787 | GO:GO:0016887 | GO:GO:0042626 | GO:GO:0055085 | GO:GO:0080051 |
| GO:GO:0080172 | InterPro:IPR003439 | RefSeq:NP_175557.1 | InterPro:P-loop_NTPase | PFAM:PF00005 | PFAM:PF01061 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | ScanProsite:PS00211 | PFscan:PS50893 | PANTHER:PTHR19241 | PANTHER:PTHR19241:SF186 | UniProt:Q9C8J8 |
| SMART:SM00382 | SUPFAM:SSF52540 | TMHMM:TMhelix | UniParc:UPI00000A045D | : | : |
Description
ABCG13ABC transporter G family member 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8J8]
Coordinates
chr1:-:19076838..19081451
Molecular Weight (calculated)
75224.8 Da
IEP (calculated)
8.676
GRAVY (calculated)
0.173
Length
678 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTPEGAMYV AWEDLTVVIP NFGEGATKRL LNGVNGCGEP NRILAIMGPS GSGKSTLLDA LAGRLAGNVV MSGKVLVNGK KRRLDFGAAA YVTQEDVLLG
101: TLTVRESISY SAHLRLPSKL TREEISDIVE ATITDMGLEE CSDRTIGNWH LRGISGGEKK RLSIALEVLT KPSLLFLDEP TSGLDSASAF FVVQILRNIA
201: SSGKTVVSSI HQPSGEVFAL FDDLLLLSGG ETVYFGEAES ATKFFGEAGF PCPSRRNPSD HFLRCVNSDF DNVTAALVES RRINDSSFSL HQLHETTNTL
301: DPLDDIPTAE IRTTLVRKFK CSLYAAASRA RIQEIASIVG IVTERKKGSQ TNWWKQLRIL TQRSFINMSR DLGYYWMRIA VYIVLSICVG SIFFNVGRNH
401: TNVMSTAACG GFMAGFMTFM SIGGFQSFIE EMKVFSRERL NGHYGVAVYT VSNLLSSLPF IILMCLSTSS ITIYMVRFQS GGSHFFYNCL DLICAITTVE
501: SCMMMIASVV PNFLMGVMLG AGYIGIMVLS AGFFRFFPDL PMVFWRYPVS YINYGAWALQ GAYKNEMIGV EYDSPLPLVP KMKGELILQT VLGINPESSK
601: WLDLAVVMMI LIGYRIAFFA ILKFREKVFP VIHMLYTKRT LSHIQKRPSF RRMTPFPSRR YPVHHALSSQ EGLNSPLH
101: TLTVRESISY SAHLRLPSKL TREEISDIVE ATITDMGLEE CSDRTIGNWH LRGISGGEKK RLSIALEVLT KPSLLFLDEP TSGLDSASAF FVVQILRNIA
201: SSGKTVVSSI HQPSGEVFAL FDDLLLLSGG ETVYFGEAES ATKFFGEAGF PCPSRRNPSD HFLRCVNSDF DNVTAALVES RRINDSSFSL HQLHETTNTL
301: DPLDDIPTAE IRTTLVRKFK CSLYAAASRA RIQEIASIVG IVTERKKGSQ TNWWKQLRIL TQRSFINMSR DLGYYWMRIA VYIVLSICVG SIFFNVGRNH
401: TNVMSTAACG GFMAGFMTFM SIGGFQSFIE EMKVFSRERL NGHYGVAVYT VSNLLSSLPF IILMCLSTSS ITIYMVRFQS GGSHFFYNCL DLICAITTVE
501: SCMMMIASVV PNFLMGVMLG AGYIGIMVLS AGFFRFFPDL PMVFWRYPVS YINYGAWALQ GAYKNEMIGV EYDSPLPLVP KMKGELILQT VLGINPESSK
601: WLDLAVVMMI LIGYRIAFFA ILKFREKVFP VIHMLYTKRT LSHIQKRPSF RRMTPFPSRR YPVHHALSSQ EGLNSPLH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.