Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 5
- vacuole 5
- plasma membrane 7
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74994 | Canola | plasma membrane | 91.13 | 91.21 |
| CDX91328 | Canola | plasma membrane | 91.13 | 91.21 |
| Bra005224.1-P | Field mustard | plasma membrane | 86.78 | 90.99 |
| VIT_08s0040g01620.t01 | Wine grape | cytosol | 69.69 | 67.74 |
| KRH32536 | Soybean | plasma membrane | 64.88 | 63.88 |
| KRH19928 | Soybean | plasma membrane | 64.79 | 63.79 |
| Solyc09g008000.2.1 | Tomato | endoplasmic reticulum, golgi, plasma membrane | 62.01 | 61.5 |
| AT5G60740.1 | Thale cress | plasma membrane | 62.11 | 60.6 |
| AT1G53390.1 | Thale cress | plasma membrane | 57.76 | 56.36 |
| AT1G17840.1 | Thale cress | cytosol, peroxisome, plasma membrane | 15.8 | 24.32 |
| AT1G51500.1 | Thale cress | cytosol, peroxisome, plasma membrane | 13.86 | 21.83 |
| AT1G51460.1 | Thale cress | plasma membrane | 13.59 | 21.68 |
| AT3G21090.1 | Thale cress | cytosol, peroxisome, plasma membrane | 13.77 | 21.56 |
| AT2G28070.1 | Thale cress | plastid | 13.31 | 19.73 |
| AT3G21080.1 | Thale cress | cytosol, peroxisome, plasma membrane | 3.79 | 16.08 |
Protein Annotations
| MapMan:24.1.3.2.2 | Gene3D:3.40.50.300 | EntrezGene:818275 | InterPro:AAA+_ATPase | ProteinID:AAD31586.1 | InterPro:ABC_transporter-like |
| InterPro:ABC_transporter_CS | ProteinID:AEC09334.1 | ProteinID:ANM61200.1 | ArrayExpress:AT2G37010 | EnsemblPlantsGene:AT2G37010 | RefSeq:AT2G37010 |
| TAIR:AT2G37010 | RefSeq:AT2G37010-TAIR-G | EnsemblPlants:AT2G37010.1 | TAIR:AT2G37010.1 | Symbol:ATNAP12 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 |
| GO:GO:0005623 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009506 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016787 | GO:GO:0016887 | GO:GO:0042626 | GO:GO:0055085 | InterPro:IPR003439 |
| RefSeq:NP_001323430.1 | RefSeq:NP_181238.4 | InterPro:P-loop_NTPase | PFAM:PF00005 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0007616 | PO:PO:0009046 | PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS00211 | PFscan:PS50893 |
| PANTHER:PTHR19241 | PANTHER:PTHR19241:SF445 | UniProt:Q9SJK6 | SMART:SM00382 | SUPFAM:SSF52540 | TMHMM:TMhelix |
| UniParc:UPI0001E92C88 | SEG:seg | : | : | : | : |
Description
WBC30Putative white-brown complex homolog protein 30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJK6]
Coordinates
chr2:+:15541389..15546285
Molecular Weight (calculated)
120586.0 Da
IEP (calculated)
8.998
GRAVY (calculated)
-0.185
Length
1082 amino acids
Sequence
(BLAST)
(BLAST)
0001: MRVRVDVCWT QHIFLFFVFG LSFMSFALSL DGDDYSKTGN PKALVSVTNL IYTRLQNLKT VLKADVDRDL GYCIKNLKGD WNEAFNFDKN LDFLSNCVKK
0101: NDGDLTLRLC SAAEIKFYFS SFVRRDEATT VHVKPNINCN LAKWVSGCEP GWSCNADDEK RFDLNNGKIL PSRTRKCQPC CEGFFCPQGL ACMIPCPLGA
0201: YCPLAKLNKT TGFCEPYNYQ IPPGKLNHTC GSADSWVDAE SSGDMFCSPG SYCPTTIRKV TCSSGHYCRQ GSTSQKPCFK LATCNPNTAN QNIHAYGAIL
0301: IASLSLLMIM VYNCSDQVLA TREKRQAKSR EAAARHAKET TQARERWKTA KGVAKNQKMG LSAQLSQTFS RMKSARKDAT PVKASGKSKD KKKEPSNLTK
0401: MMKSMEENPS NNEGFNVGTG SKPGKKPQAP KGKQLHTQSQ IFKYAYGQIE KEKAMEQNNK NLTFSGVISM ATDTEMRTRP VIEVAFKDLT LTLKGKHKHI
0501: LRSVTGKIMP GRVSAVMGPS GAGKTTFLSA LAGKATGCTR TGLILINGRN DSINSYKKIT GFVPQDDVVH GNLTVEENLR FSARCRLSAY MSKADKVLII
0601: ERVIESLGLQ HVRDSLVGTI EKRGISGGQR KRVNVGVEMV MEPSLLILDE PTTGLDSASS QLLLRALRRE ALEGVNICMV VHQPSYTMYK MFDDMIILAK
0701: GGLTVYHGSV KKIEEYFADI GITVPDRVNP PDHYIDILEG IVKPDGDITI EQLPVRWMLH NGYPVPHDML KFCDGLPSSS TGSAQEDSTH NSFSNDLWQD
0801: VKTNVEITKD QLQHNYSNSH DNSNRVTPTV GRQYRYFVGR VGKQRLREAR LQALDFLILL VAGACLGTLA KVNDETIDTL GYTYTIIAVS LLCKISALRS
0901: FSVDKLQYWR ESAAGISSLA HFMAKDTMDH LNTIMKPLVY LSMFYFFNNP RSSFEDNYIV LVCLVYCVTG MAYIFAILYS PSAAQLLSVL VPVVMTLIAN
1001: QDKESMVLKY LGSFCYPKWT LEAFVLSNAQ RYSGVWVVTR CSSLSQNGYD LSDWILCLIV LVLMGLICRF IAYFCMVTFQ KK
0101: NDGDLTLRLC SAAEIKFYFS SFVRRDEATT VHVKPNINCN LAKWVSGCEP GWSCNADDEK RFDLNNGKIL PSRTRKCQPC CEGFFCPQGL ACMIPCPLGA
0201: YCPLAKLNKT TGFCEPYNYQ IPPGKLNHTC GSADSWVDAE SSGDMFCSPG SYCPTTIRKV TCSSGHYCRQ GSTSQKPCFK LATCNPNTAN QNIHAYGAIL
0301: IASLSLLMIM VYNCSDQVLA TREKRQAKSR EAAARHAKET TQARERWKTA KGVAKNQKMG LSAQLSQTFS RMKSARKDAT PVKASGKSKD KKKEPSNLTK
0401: MMKSMEENPS NNEGFNVGTG SKPGKKPQAP KGKQLHTQSQ IFKYAYGQIE KEKAMEQNNK NLTFSGVISM ATDTEMRTRP VIEVAFKDLT LTLKGKHKHI
0501: LRSVTGKIMP GRVSAVMGPS GAGKTTFLSA LAGKATGCTR TGLILINGRN DSINSYKKIT GFVPQDDVVH GNLTVEENLR FSARCRLSAY MSKADKVLII
0601: ERVIESLGLQ HVRDSLVGTI EKRGISGGQR KRVNVGVEMV MEPSLLILDE PTTGLDSASS QLLLRALRRE ALEGVNICMV VHQPSYTMYK MFDDMIILAK
0701: GGLTVYHGSV KKIEEYFADI GITVPDRVNP PDHYIDILEG IVKPDGDITI EQLPVRWMLH NGYPVPHDML KFCDGLPSSS TGSAQEDSTH NSFSNDLWQD
0801: VKTNVEITKD QLQHNYSNSH DNSNRVTPTV GRQYRYFVGR VGKQRLREAR LQALDFLILL VAGACLGTLA KVNDETIDTL GYTYTIIAVS LLCKISALRS
0901: FSVDKLQYWR ESAAGISSLA HFMAKDTMDH LNTIMKPLVY LSMFYFFNNP RSSFEDNYIV LVCLVYCVTG MAYIFAILYS PSAAQLLSVL VPVVMTLIAN
1001: QDKESMVLKY LGSFCYPKWT LEAFVLSNAQ RYSGVWVVTR CSSLSQNGYD LSDWILCLIV LVLMGLICRF IAYFCMVTFQ KK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.