Factsheet for PGSC0003DMT400069344

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
golgi 5
plasma membrane 8
endoplasmic reticulum 5
vacuole 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g072090.1.1	Tomato	cytosol, plasma membrane, plastid	96.1	41.06
PGSC0003DMT400069337	Potato	cytosol, peroxisome, plastid	80.85	34.76
GSMUA_Achr5P19820_001	Banana	cytosol, peroxisome, plasma membrane	75.53	31.93
PGSC0003DMT400039496	Potato	cytosol, peroxisome, plasma membrane	79.43	31.68
GSMUA_Achr5P10800_001	Banana	cytosol, peroxisome, plasma membrane	75.89	30.88
TraesCS1A01G164500.1	Wheat	cytosol	73.76	30.32
TraesCS1B01G181300.2	Wheat	cytosol, peroxisome, plasma membrane	74.11	29.19
KXG38261	Sorghum	cytosol, peroxisome, plasma membrane	73.76	29.13
TraesCS1D01G161500.2	Wheat	cytosol, peroxisome, plasma membrane	73.76	29.05
Zm00001d002871_P001	Maize	cytosol, peroxisome, plasma membrane	73.4	28.71
Os04t0528300-01	Rice	plasma membrane	72.34	28.69
Os10t0494300-01	Rice	extracellular, plasma membrane	73.4	28.63
TraesCSU01G020100.1	Wheat	plasma membrane	71.99	28.35
Zm00001d013960_P001	Maize	cytosol, peroxisome, plasma membrane	71.28	28.31
TraesCS2A01G374100.1	Wheat	plasma membrane	71.63	28.13
HORVU2Hr1G090960.2	Barley	cytosol	72.34	26.98
OQU82009	Sorghum	mitochondrion	73.05	26.41
TraesCS2D01G370400.2	Wheat	plastid	71.99	26.16
Zm00001d032601_P002	Maize	cytosol, peroxisome, plasma membrane	68.09	26.09
PGSC0003DMT400077106	Potato	cytosol, peroxisome, plasma membrane	53.55	22.14
PGSC0003DMT400032670	Potato	cytosol, peroxisome, plasma membrane	47.52	21.3
TraesCS1D01G150800.1	Wheat	cytosol, peroxisome, plasma membrane	54.26	21.25
PGSC0003DMT400041814	Potato	cytosol, peroxisome, plasma membrane	48.23	21.09
PGSC0003DMT400043270	Potato	cytosol	37.23	16.1
PGSC0003DMT400050589	Potato	plastid	31.56	12.31
PGSC0003DMT400031312	Potato	plastid	31.56	12.31
PGSC0003DMT400031316	Potato	mitochondrion, plastid	16.31	4.29
PGSC0003DMT400032669	Potato	mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400069344	EnsemblPlantsGene:PGSC0003DMG400026972	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:ABC_2_trans
PANTHER:PTHR19241	PANTHER:PTHR19241:SF271	PFAM:PF01061	PGSC:PGSC0003DMG400026972	SEG:seg	TMHMM:TMhelix
UniParc:UPI00029577BA	UniProt:M1CKB6	MapMan:35.1	:	:	:

Description

White-brown-complex ABC transporter family [Source:PGSC_GENE;Acc:PGSC0003DMG400026972]

Coordinates

chr6:-:52889174..52890934

Molecular Weight (calculated)

32330.1 Da

IEP (calculated)

9.584

GRAVY (calculated)

0.553

Length

282 amino acids

Sequence
(BLAST)

001: MSRDFGYYWL RIVIYLVVSV CLGTIYFNVG TKYNSIQARA ACSSFVFGFM TFMSIGGFPS FVEDMKVFQR ERMNGHYGVI VFVISNTLSA MPFLILIAIL
101: SGTVCYFMVH FHPGFSHYLF FVLALYASIT AVESLMMVIA SVVPNFLMGI IIGAGILGIS MLVSGFFRLP YDIPKPVWRY PVSYLTFDFW AVQGQYKNDL
201: KGLIFDNQSP HPPKITGEYA LKHIFQIDVN RSKWVDLSAI FSLIIIYRVI FFIMIKINED VTPWLRVYIS RRKMQQNGAN QN

Best Arabidopsis Sequence Match ( AT1G17840.1 )
(BLAST)

001: MEIEASRQQT TVPVSVGGGN FPVGGLSPLS EAIWREKAPT EFVGDVSARL TWQDLTVMVT MGDGETQNVL EGLTGYAEPG SLTALMGPSG SGKSTMLDAL
101: ASRLAANAFL SGTVLLNGRK TKLSFGTAAY VTQDDNLIGT LTVRETIWYS ARVRLPDKML RSEKRALVER TIIEMGLQDC ADTVIGNWHL RGISGGEKRR
201: VSIALEILMR PRLLFLDEPT SGLDSASAFF VTQTLRALSR DGRTVIASIH QPSSEVFELF DRLYLLSGGK TVYFGQASDA YEFFAQAGFP CPALRNPSDH
301: FLRCINSDFD KVRATLKGSM KLRFEASDDP LEKITTAEAI RLLVDYYHTS DYYYTAKAKV EEISQFKGTI LDSGGSQASF LLQTYTLTKR SFINMSRDFG
401: YYWLRLLIYI LVTVCIGTIY LNVGTSYSAI LARGSCASFV FGFVTFMSIG GFPSFVEDMK VFQRERLNGH YGVAAFVIAN TLSATPFLIM ITFISGTICY
501: FMVGLHPGFT HYLFFVLCLY ASVTVVESLM MAIASIVPNF LMGIIIGAGI QGIFMLVSGF FRLPNDIPKP FWRYPMSYIS FHFWALQGQY QNDLRGLTFD
601: SQGSAFKIPG EYVLENVFQI DLHRSKWINL SVILSMIIIY RIIFFIMIKT NEDVTPWVRG YIARRRMKQK NGTQNTTVAP DGLTQSPSLR NYIATRTDGA
701: RRW

Arabidopsis Description

ABCG11ABC transporter G family member 11 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXN0]
SUBAcon: [cytosol,plasma membrane,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.