Factsheet for VIT_06s0061g00230.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01
VIT_12s0028g03650.t01
VIT_12s0028g03700.t01
VIT_18s0072g01030.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51500.1	VIT_06s0009g01910.t01	AT3G56800.1	15299147
AT1G51500.1	VIT_08s0040g00470.t01	AT3G56800.1	15299147
AT1G51500.1	VIT_12s0028g03650.t01	AT4G03560.1	15299147
AT1G51500.1	VIT_12s0028g03700.t01	AT4G03560.1	15299147
AT3G21090.1	VIT_18s0072g01030.t01	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24076	Soybean	cytosol, peroxisome, plasma membrane	79.42	71.08
KRH29048	Soybean	cytosol, peroxisome, plasma membrane	79.26	70.53
VIT_06s0061g00260.t01	Wine grape	cytosol	76.85	70.09
CDY61513	Canola	golgi, mitochondrion, peroxisome, plasma membrane	69.13	68.25
Solyc11g065350.1.1	Tomato	cytosol, peroxisome, plasma membrane	74.44	67.89
PGSC0003DMT400077106	Potato	cytosol, peroxisome, plasma membrane	73.95	67.45
GSMUA_Achr4P00390_001	Banana	plasma membrane	65.43	65.75
AT3G21090.1	Thale cress	cytosol, peroxisome, plasma membrane	72.35	65.12
Bra030437.1-P	Field mustard	nucleus, peroxisome, plasma membrane	71.86	64.6
CDY43913	Canola	nucleus, peroxisome, plasma membrane	71.86	64.6
Bra031249.1-P	Field mustard	peroxisome	71.06	63.97
CDX87823	Canola	nucleus, peroxisome, plasma membrane	69.61	63.96
AT1G51500.1	Thale cress	cytosol, peroxisome, plasma membrane	70.42	63.76
CDY06406	Canola	peroxisome	68.97	63.18
CDY18337	Canola	plasma membrane	24.6	61.94
Zm00001d010426_P001	Maize	plastid	66.72	60.14
EES19248	Sorghum	cytosol, peroxisome, plasma membrane	66.08	59.74
VIT_06s0061g00250.t01	Wine grape	cytosol	33.92	59.6
Os05t0222200-01	Rice	nucleus, peroxisome, plasma membrane	66.72	59.29
HORVU1Hr1G030200.1	Barley	nucleus, peroxisome, plasma membrane	64.95	58.64
TraesCS1D01G126600.1	Wheat	nucleus, peroxisome, plasma membrane	64.95	58.64
TraesCS1A01G126900.1	Wheat	nucleus, peroxisome, plasma membrane	64.95	58.64
VIT_06s0061g00240.t01	Wine grape	cytosol, peroxisome, plasma membrane	68.49	58.6
TraesCS1B01G147700.1	Wheat	nucleus, peroxisome, plasma membrane	64.79	58.49
VIT_16s0039g00010.t01	Wine grape	cytosol, peroxisome, plasma membrane	57.72	50.92
GSMUA_Achr4P00380_001	Banana	plastid	63.5	47.65
VIT_07s0191g00010.t01	Wine grape	peroxisome, plasma membrane, vacuole	47.91	47.38
VIT_00s0822g00010.t01	Wine grape	cytosol, peroxisome, plasma membrane	18.33	46.91
VIT_03s0017g01320.t01	Wine grape	plasma membrane	47.11	45.43
VIT_03s0017g01290.t01	Wine grape	cytosol	46.62	45.03
VIT_03s0017g01280.t01	Wine grape	cytosol, nucleus, peroxisome, plastid	46.3	42.6
VIT_03s0017g01300.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	45.66	42.14
VIT_00s0625g00050.t01	Wine grape	cytosol	42.44	41.06
VIT_00s0625g00020.t01	Wine grape	plastid	48.23	40.49
VIT_00s0989g00010.t01	Wine grape	plastid	48.71	34.01
VIT_06s0061g00350.t01	Wine grape	plastid	35.85	30.89
VIT_06s0009g00530.t01	Wine grape	mitochondrion	9.0	30.11
VIT_06s0004g02490.t01	Wine grape	plasma membrane	24.44	13.83
VIT_08s0040g01620.t01	Wine grape	cytosol	23.31	13.03
VIT_13s0019g04600.t01	Wine grape	plasma membrane	22.99	12.77

Protein Annotations

EntrezGene:100267086	wikigene:100267086	MapMan:21.9.4.2	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ABC_2_trans	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	ProteinID:CBI17179	ProteinID:CBI17179.3	UniProt:D7SNF0
EMBL:FN594957	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085
InterPro:IPR003439	EntrezGene:LOC100267086	wikigene:LOC100267086	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061
ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF338	SMART:SM00382	SUPFAM:SSF52540
TIGR:TC60503	TMHMM:TMhelix	UniParc:UPI0001BE0FA6	ArrayExpress:VIT_06s0061g00230	EnsemblPlantsGene:VIT_06s0061g00230	EnsemblPlants:VIT_06s0061g00230.t01
unigene:Vvi.11996	RefSeq:XP_002274109	RefSeq:XP_002274109.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:+:17493185..17498593

Molecular Weight (calculated)

69756.9 Da

IEP (calculated)

9.195

GRAVY (calculated)

0.133

Length

622 amino acids

Sequence
(BLAST)

001: MGPSGSGKST LLDSLAGRLS RNVIMTGNVL LNGRKRRLDC GFVAYVTQED VLLGTLTVRE TITYSAHLRL PTSMTKEEIN GIVDGTIMEM GLQDCSDRLI
101: GNWHLRGISG GEKKRLSIAL EILTRPRLLF LDEPTSGLDS ASAFFVIQTL RNVARDGRTI ISSIHQPSSE VFDLFDDLFL LSGGETIYFG EAKKALEFFA
201: EAGFPCPSRR SPSDHFLRCI NSDFDIVTAT LKGSQRLREI QQSSNSVMEL ATAEIKAILA DKYRGSKYQR RAGERIREIS TSEGLVPGSQ SGSQASWWKQ
301: LVTLTRRSFL NMSRDVGYYW LRLMIYIVVS ICVGTIYFDV GTSYTAILAR CACGGFISGF MTFMSIGAFP SFVEEMKVFY RERLNGHYGV AVFILSNFLS
401: SFPYLVAISV ATGTITFYMV KFRSEFSHYV FFCLNLFSCI AVVESCMMVV ASLVPNFLMG IITGAGLIGI MMMTSGFFRL LSDLPKPFWR YPVSYISYGA
501: WGLQGAYKND LIGLEFEPLI SGDPKLKGSE IITNMLGIQL DHSKWWDLTA LFIILISYRL IFFLILKFKE RAWPYFQTLH SNRTLQQLNR RPSFHTKPSF
601: PSKRHQALHS LSSQEGLSSP IA

Best Arabidopsis Sequence Match ( AT3G21090.1 )
(BLAST)

001: MELEGSSSGR RQLPSKLEMS RGAYLAWEDL TVVIPNFSDG PTRRLLQRLN GYAEPGRIMA IMGPSGSGKS TLLDSLAGRL ARNVVMTGNL LLNGKKARLD
101: YGLVAYVTQE DVLLGTLTVR ETITYSAHLR LPSDMSKEEV SDIVEGTIME LGLQDCSDRV IGNWHARGVS GGERKRVSIA LEILTRPQIL FLDEPTSGLD
201: SASAFFVIQA LRNIARDGRT VISSVHQPSS EVFALFDDLF LLSSGESVYF GEAKSAVEFF AESGFPCPKK RNPSDHFLRC INSDFDTVTA TLKGSQRIQE
301: TPATSDPLMN LATSVIKARL VENYKRSKYA KSAKSRIREL SNIEGLEMEI RKGSEATWWK QLRTLTARSF INMCRDVGYY WTRIISYIVV SISVGTIFYD
401: VGYSYTSILA RVSCGGFITG FMTFMSIGGF PSFLEEMKVF YKERLSGYYG VSVYILSNYI SSFPFLVAIS VITGTITYNL VKFRPGFSHY AFFCLNIFFS
501: VSVIESLMMV VASVVPNFLM GLITGAGLIG IIMMTSGFFR LLPDLPKIFW RYPVSYISYG SWAIQGGYKN DFLGLEFEPL FPGEPKMTGE EVIEKVFGVK
601: VTYSKWWDLA AVVAILVCYR LLFFVVLKLR ERAGPALKAI QAKRTMRNLD RRPSFKRMPS LSLSLSSMSS RRHQPLRSLS SQEGLNSPIH Y

Arabidopsis Description

ABCG15ABC transporter G family member 15 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWI9]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.