Factsheet for PGSC0003DMT400047241

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400077106

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G03560.1	PGSC0003DMT400077106	AT1G51500.1	15299147

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0028g03700.t01	Wine grape	cytosol, peroxisome, plasma membrane	55.17	30.6
Solyc07g053970.2.1	Tomato	nucleus	94.09	25.85
KRH22384	Soybean	plasma membrane	58.13	15.99
KRH26949	Soybean	plasma membrane	56.65	15.56
CDY21975	Canola	plasma membrane	56.16	15.45
AT4G03560.1	Thale cress	plasma membrane	55.17	15.28
CDY48568	Canola	plasma membrane	50.74	14.33
Bra034219.1-P	Field mustard	plasma membrane	50.74	14.29
Bra000820.1-P	Field mustard	plasma membrane	51.23	14.23
TraesCS3B01G303100.1	Wheat	plasma membrane	51.23	14.02
TraesCS3A01G268700.1	Wheat	plasma membrane	50.74	13.88
TraesCS3D01G268800.1	Wheat	plasma membrane	50.74	13.88
CDY61997	Canola	plasma membrane	48.77	13.83
KXG33111	Sorghum	plasma membrane	50.74	13.71
Os01t0678500-02	Rice	plasma membrane	50.25	13.47
Zm00001d011595_P007	Maize	plasma membrane	47.78	13.29
CDY48215	Canola	plasma membrane	50.74	12.84
GSMUA_Achr4P15260_001	Banana	plasma membrane	9.85	5.75
VIT_12s0028g03650.t01	Wine grape	plasma membrane	4.93	4.13

Protein Annotations

EnsemblPlants:PGSC0003DMT400047241	EnsemblPlantsGene:PGSC0003DMG400018342	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	PGSC:PGSC0003DMG400018342
SEG:seg	TMHMM:TMhelix	UniParc:UPI00029547D8	UniProt:M1BKD0	MapMan:24.3.2.1	:

Description

Two pore calcium channel protein 1A [Source:PGSC_GENE;Acc:PGSC0003DMG400018342]

Coordinates

chr7:+:49187852..49195251

Molecular Weight (calculated)

24278.3 Da

IEP (calculated)

9.553

GRAVY (calculated)

0.619

Length

203 amino acids

Sequence
(BLAST)

001: MFTRFDFLWS LNYLALILIN FFEKPLWCSR HLAESCNNRD YYYLGQLPFL TGAESLIYEG VTLLLLVIHI LFPISYEGFH LYWRSLLNRL KIVLLLILVA
101: DIVVYILFLA DFYYLPFRIA SYLRVVFFIL NIRELRDSFF ILAGMFRTYL NVVLVKQVAE KDRRKLRTLK KAFSLIDDSV SRYFITGLHV FNILLFLPFT
201: HER

Best Arabidopsis Sequence Match ( AT4G03560.1 )
(BLAST)

001: MEDPLIGRDS LGGGGTDRVR RSEAITHGTP FQKAAALVDL AEDGIGLPVE ILDQSSFGES ARYYFIFTRL DLIWSLNYFA LLFLNFFEQP LWCEKNPKPS
101: CKDRDYYYLG ELPYLTNAES IIYEVITLAI LLVHTFFPIS YEGSRIFWTS RLNLVKVACV VILFVDVLVD FLYLSPLAFD FLPFRIAPYV RVIIFILSIR
201: ELRDTLVLLS GMLGTYLNIL ALWMLFLLFA SWIAFVMFED TQQGLTVFTS YGATLYQMFI LFTTSNNPDV WIPAYKSSRW SSVFFVLYVL IGVYFVTNLI
301: LAVVYDSFKE QLAKQVSGMD QMKRRMLEKA FGLIDSDKNG EIDKNQCIKL FEQLTNYRTL PKISKEEFGL IFDELDDTRD FKINKDEFAD LCQAIALRFQ
401: KEEVPSLFEH FPQIYHSALS QQLRAFVRSP NFGYAISFIL IINFIAVVVE TTLDIEESSA QKPWQVAEFV FGWIYVLEMA LKIYTYGFEN YWREGANRFD
501: FLVTWVIVIG ETATFITPDE NTFFSNGEWI RYLLLARMLR LIRLLMNVQR YRAFIATFIT LIPSLMPYLG TIFCVLCIYC SIGVQVFGGL VNAGNKKLFE
601: TELAEDDYLL FNFNDYPNGM VTLFNLLVMG NWQVWMESYK DLTGTWWSIT YFVSFYVITI LLLLNLVVAF VLEAFFTELD LEEEEKCQGQ DSQEKRNRRR
701: SAGSKSRSQR VDTLLHHMLG DELSKPECST SDT

Arabidopsis Description

TPC1AT4G03560 protein [Source:UniProtKB/TrEMBL;Acc:B9DFD5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.