Factsheet for TraesCS3B01G303100.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	peroxisome, secretory
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G126900.1
TraesCS1B01G147700.1
TraesCS1D01G126600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G03560.1	TraesCS1A01G126900.1	AT1G51500.1	15299147
AT4G03560.1	TraesCS1B01G147700.1	AT1G51500.1	15299147
AT4G03560.1	TraesCS1D01G126600.1	AT1G51500.1	15299147

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G268800.1	Wheat	plasma membrane	98.52	98.52
TraesCS3A01G268700.1	Wheat	plasma membrane	98.38	98.38
KXG33111	Sorghum	plasma membrane	84.77	83.75
Os01t0678500-02	Rice	plasma membrane	85.31	83.62
Zm00001d011595_P007	Maize	plasma membrane	78.44	79.73
VIT_12s0028g03650.t01	Wine grape	plasma membrane	20.08	61.57
GSMUA_Achr4P15270_001	Banana	plasma membrane	34.1	61.41
Solyc07g053970.2.1	Tomato	nucleus	60.11	60.35
VIT_12s0028g03700.t01	Wine grape	cytosol, peroxisome, plasma membrane	29.65	60.11
KRH26949	Soybean	plasma membrane	59.84	60.08
KRH22384	Soybean	plasma membrane	59.7	60.03
CDY61997	Canola	plasma membrane	56.47	58.52
CDY48568	Canola	plasma membrane	56.6	58.41
CDY21975	Canola	plasma membrane	58.09	58.4
AT4G03560.1	Thale cress	plasma membrane	57.68	58.39
Bra034219.1-P	Field mustard	plasma membrane	56.6	58.25
Bra000820.1-P	Field mustard	plasma membrane	57.01	57.87
CDY48215	Canola	plasma membrane	56.74	52.49
PGSC0003DMT400047241	Potato	extracellular	14.02	51.23

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.287.70	Gene3D:1.20.120.350	MapMan:24.3.2.1	InterPro:EF-hand-dom_pair	InterPro:EF_hand_dom
GO:GO:0003674	GO:GO:0005215	GO:GO:0005216	GO:GO:0005245	GO:GO:0005488	GO:GO:0005509
GO:GO:0005575	GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0016020	GO:GO:0055085
InterPro:IPR002048	InterPro:IPR027359	InterPro:Ion_trans_dom	PFAM:PF00520	PFAM:PF13499	PFscan:PS50222
PANTHER:PTHR10037	PANTHER:PTHR10037:SF231	SMART:SM00054	SUPFAM:SSF47473	SUPFAM:SSF81324	TMHMM:TMhelix
InterPro:TPC1	EnsemblPlantsGene:TraesCS3B01G303100	EnsemblPlants:TraesCS3B01G303100.1	InterPro:Volt_channel_dom_sf	TIGR:cd00051	SEG:seg

Description

No Description!

Coordinates

chr3B:+:487203293..487224910

Molecular Weight (calculated)

85648.5 Da

IEP (calculated)

5.080

GRAVY (calculated)

0.304

Length

742 amino acids

Sequence
(BLAST)

001: MSEAEAPLIT EEAAERGLAS SGSRRLSDGG GEQGSRKYRR RSDALAYGDR YQKAAALVDL AEDGVGIPED VLNDTRFGRA MSFYFVYLRL DWLWSLNLFA
101: LILLNFLEKP LWCRKDALHA CDQRDLYFLG QLPYFSKTES LIYEGLTLVI LVMDIFCPLS YEGLNIFWRS TTNKLKIVLL FILACDILVF AFSSQPFRLA
201: PYIRVVFLIM TIRELRMCAI TLAGLIGTYL NVLALSLLFL LFASWLAYVT FEDTPQGKTI FSSYGVTLYQ MFVLFTTSNN PDVWVHAYKI SRWYSLFFIV
301: YVLLGVYFLT NLILAVIYDS FKEQFAKQLV QVDSIRKNIL QKAFDLIDTN NRGYLDREQC ISLLNELNKY RSLPKTSRED FELIFAELDR SGDFKVTSEE
401: FADLCNTIAI KFQKEPPPSY LEKFPFYHSP LCGRLKSFVR SRMFEYIIVF VLLINLVAVI IETTLDIENS SSQETWQEVE FFLGWIYVAE MALKIFSLGF
501: GAYWMEGQNK FDFVLTWTIF IGETLTFAFP SKLPFLSNGE WIRYLLLGRV LRLTRILLQV QRFRAFVATF FTLMSSLMPY LGIVFCVLCM YCSIGLQIFG
601: GIVYAGNPTL EETDLFNNDY LLFNFNDYPS GMVTLFNLLV MGNWQVWMES YWQLTGTSWS LIYFVSFYLI SILLLLNLIV AFVLEAFFAE MELEKGEEVD
701: IQNPTSGGIK KRRSMRVRSK GTMVDILLHH MLSNELDGSQ NS

Best Arabidopsis Sequence Match ( AT4G03560.1 )
(BLAST)

001: MEDPLIGRDS LGGGGTDRVR RSEAITHGTP FQKAAALVDL AEDGIGLPVE ILDQSSFGES ARYYFIFTRL DLIWSLNYFA LLFLNFFEQP LWCEKNPKPS
101: CKDRDYYYLG ELPYLTNAES IIYEVITLAI LLVHTFFPIS YEGSRIFWTS RLNLVKVACV VILFVDVLVD FLYLSPLAFD FLPFRIAPYV RVIIFILSIR
201: ELRDTLVLLS GMLGTYLNIL ALWMLFLLFA SWIAFVMFED TQQGLTVFTS YGATLYQMFI LFTTSNNPDV WIPAYKSSRW SSVFFVLYVL IGVYFVTNLI
301: LAVVYDSFKE QLAKQVSGMD QMKRRMLEKA FGLIDSDKNG EIDKNQCIKL FEQLTNYRTL PKISKEEFGL IFDELDDTRD FKINKDEFAD LCQAIALRFQ
401: KEEVPSLFEH FPQIYHSALS QQLRAFVRSP NFGYAISFIL IINFIAVVVE TTLDIEESSA QKPWQVAEFV FGWIYVLEMA LKIYTYGFEN YWREGANRFD
501: FLVTWVIVIG ETATFITPDE NTFFSNGEWI RYLLLARMLR LIRLLMNVQR YRAFIATFIT LIPSLMPYLG TIFCVLCIYC SIGVQVFGGL VNAGNKKLFE
601: TELAEDDYLL FNFNDYPNGM VTLFNLLVMG NWQVWMESYK DLTGTWWSIT YFVSFYVITI LLLLNLVVAF VLEAFFTELD LEEEEKCQGQ DSQEKRNRRR
701: SAGSKSRSQR VDTLLHHMLG DELSKPECST SDT

Arabidopsis Description

TPC1AT4G03560 protein [Source:UniProtKB/TrEMBL;Acc:B9DFD5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.