Factsheet for Os01t0678500-02

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 3
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, nucleus, peroxisome, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Os05t0222200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G03560.1	Os05t0222200-01	AT1G51500.1	15299147

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG33111	Sorghum	plasma membrane	85.2	85.89
TraesCS3A01G268700.1	Wheat	plasma membrane	83.88	85.58
TraesCS3D01G268800.1	Wheat	plasma membrane	83.75	85.44
TraesCS3B01G303100.1	Wheat	plasma membrane	83.62	85.31
Zm00001d011595_P007	Maize	plasma membrane	78.47	81.37
GSMUA_Achr4P15270_001	Banana	plasma membrane	35.14	64.56
VIT_12s0028g03700.t01	Wine grape	cytosol, peroxisome, plasma membrane	29.99	62.02
VIT_12s0028g03650.t01	Wine grape	plasma membrane	19.68	61.57
KRH26949	Soybean	plasma membrane	60.11	61.57
KRH22384	Soybean	plasma membrane	59.45	60.98
Solyc07g053970.2.1	Tomato	nucleus	59.31	60.76
CDY61997	Canola	plasma membrane	56.41	59.64
CDY21975	Canola	plasma membrane	57.86	59.35
AT4G03560.1	Thale cress	plasma membrane	57.46	59.35
CDY48568	Canola	plasma membrane	56.27	59.25
Bra034219.1-P	Field mustard	plasma membrane	56.27	59.08
Bra000820.1-P	Field mustard	plasma membrane	56.94	58.96
CDY48215	Canola	plasma membrane	56.8	53.62
PGSC0003DMT400047241	Potato	extracellular	13.47	50.25

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.287.70	Gene3D:1.20.120.350	MapMan:24.3.2.1	EntrezGene:4325272	EMBL:AB071014
EMBL:AB100696	ProteinID:BAD73469.1	ProteinID:BAD73470.1	ProteinID:BAF05772.1	ProteinID:BAS73676.1	ProteinID:EEE55175.1
InterPro:EF-hand-dom_pair	InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005215	GO:GO:0005216	GO:GO:0005244
GO:GO:0005245	GO:GO:0005261	GO:GO:0005262	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0006811	GO:GO:0006816	GO:GO:0006950
GO:GO:0006952	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0034220	GO:GO:0034765
GO:GO:0055085	GO:GO:0070588	GO:GO:0086010	InterPro:IPR002048	InterPro:IPR027359	InterPro:Ion_trans_dom
EnsemblPlantsGene:Os01g0678500	EnsemblPlants:Os01t0678500-02	PFAM:PF00520	PFscan:PS50222	PANTHER:PTHR10037	PANTHER:PTHR10037:SF231
UniProt:Q5QM84	SMART:SM00054	SUPFAM:SSF47473	SUPFAM:SSF81324	TMHMM:TMhelix	InterPro:TPC1
UniParc:UPI00001AB0AE	InterPro:Volt_channel_dom_sf	RefSeq:XP_015621659.1	SEG:seg	:	:

Description

TWO-PORE CHANNEL 1Voltage-gated Ca2+ channel protein, Elicitor-induced defense reponses, Hypersensitive cell death, Activation of MAPK cascade (Os01t0678500-01);Voltage-gated Ca2+ channel protein, Elicitor-induced defense reponses, Hypersensitive cell death, Activation of MAPK cascade (Os01t0678500-02)

Coordinates

chr1:-:27906660..27920895

Molecular Weight (calculated)

87073.9 Da

IEP (calculated)

5.463

GRAVY (calculated)

0.233

Length

757 amino acids

Sequence
(BLAST)

001: MRERGEMREA KAPLIAEAAE HISHSHGSGS SGTGSHTSGG GGGWRGSRQY QRRSDALAYG NRYQKAAALV DLAEDGVGIP EDVLNDTRFE RAMRFYFVYL
101: RLDWLWSLNL FALILLNFLE KPLWCRGYSQ HACDQRDLYF LGQLPYLSKT ESLIYEGLTL VILVMDIFYP LSYEGLNLFW KNTINKLKVL LLFILACDIL
201: VFAFSPQPFR VAPYIRVAFL IMNIRELRMC AVTLVGMVGT YLNVLALSLL FLLFASWLAY VTFEDTPQGK TVFSSYGTTL YQMFILFTTS NNPDVWVPAY
301: KSSRWSSLFF IVYVLLGVYF LTNLILAVIY DSFKEQLAKQ VSQADCTRKS ILEKAFGIID ATGQGYLNKE QCLSLLDELN KYRSLPKTSR EDFELIFAEL
401: DQSGDFKVTS EEFATLCNTI AIKFQKEPPP SYLEKYPSFY HSALCEWLKS FVRSPLFEYI VIFVLLMNLV AVIIETTLDI ENSSSQKVWQ EVEFVFGWIY
501: VIEMALKIFS LGFGAYWMEG QNKFDFVLTW TIFIGETLTF AFPSKLSFLS NGEWIRYLLL GRMLRLTRIL LQVRRFRAFV ATFFTLMSSL MPYLGIVFCT
601: LCIYCSLGLQ IFGGIVYAGN PTLEETDLFS NDYLLFNFND YPSGMVTLFN LLVMGNWQAW MESYRQLTGS YWSLIYFVSF YLISVLLLLN LIVAFVLEAF
701: FAEMELEKDG EADIQDPTLE GRNRRRSVRV RTKGTMVDIL LHHMLSNELD GSQNRDQ

Best Arabidopsis Sequence Match ( AT4G03560.1 )
(BLAST)

001: MEDPLIGRDS LGGGGTDRVR RSEAITHGTP FQKAAALVDL AEDGIGLPVE ILDQSSFGES ARYYFIFTRL DLIWSLNYFA LLFLNFFEQP LWCEKNPKPS
101: CKDRDYYYLG ELPYLTNAES IIYEVITLAI LLVHTFFPIS YEGSRIFWTS RLNLVKVACV VILFVDVLVD FLYLSPLAFD FLPFRIAPYV RVIIFILSIR
201: ELRDTLVLLS GMLGTYLNIL ALWMLFLLFA SWIAFVMFED TQQGLTVFTS YGATLYQMFI LFTTSNNPDV WIPAYKSSRW SSVFFVLYVL IGVYFVTNLI
301: LAVVYDSFKE QLAKQVSGMD QMKRRMLEKA FGLIDSDKNG EIDKNQCIKL FEQLTNYRTL PKISKEEFGL IFDELDDTRD FKINKDEFAD LCQAIALRFQ
401: KEEVPSLFEH FPQIYHSALS QQLRAFVRSP NFGYAISFIL IINFIAVVVE TTLDIEESSA QKPWQVAEFV FGWIYVLEMA LKIYTYGFEN YWREGANRFD
501: FLVTWVIVIG ETATFITPDE NTFFSNGEWI RYLLLARMLR LIRLLMNVQR YRAFIATFIT LIPSLMPYLG TIFCVLCIYC SIGVQVFGGL VNAGNKKLFE
601: TELAEDDYLL FNFNDYPNGM VTLFNLLVMG NWQVWMESYK DLTGTWWSIT YFVSFYVITI LLLLNLVVAF VLEAFFTELD LEEEEKCQGQ DSQEKRNRRR
701: SAGSKSRSQR VDTLLHHMLG DELSKPECST SDT

Arabidopsis Description

TPC1AT4G03560 protein [Source:UniProtKB/TrEMBL;Acc:B9DFD5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.