Factsheet for PGSC0003DMT400065801

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400014123
PGSC0003DMT400018569
PGSC0003DMT400046278
PGSC0003DMT400054299
PGSC0003DMT400058435
PGSC0003DMT400070437
PGSC0003DMT400097662

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14370.1	PGSC0003DMT400014123	AT2G41090.1	17360592
AT1G14370.1	PGSC0003DMT400018569	AT2G41090.1	17360592
AT1G14370.1	PGSC0003DMT400046278	AT2G41090.1	17360592
AT1G14370.1	PGSC0003DMT400054299	AT2G41090.1	17360592
AT1G14370.1	PGSC0003DMT400058435	AT2G41090.1	17360592
AT1G14370.1	PGSC0003DMT400070437	AT2G41090.1	17360592
AT1G14370.1	PGSC0003DMT400097662	AT2G41090.1	17360592
AT1G14370.1	PGSC0003DMT400014123	AT5G21274.1	17360592
AT1G14370.1	PGSC0003DMT400018569	AT5G21274.1	17360592
AT1G14370.1	PGSC0003DMT400046278	AT5G21274.1	17360592
AT1G14370.1	PGSC0003DMT400054299	AT5G21274.1	17360592
AT1G14370.1	PGSC0003DMT400058435	AT5G21274.1	17360592
AT1G14370.1	PGSC0003DMT400070437	AT5G21274.1	17360592
AT1G14370.1	PGSC0003DMT400097662	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g007140.2.1	Tomato	plastid	98.1	98.1
PGSC0003DMT400002280	Potato	plastid	85.48	85.68
KRH74810	Soybean	cytosol, plastid	76.19	77.86
KRH69316	Soybean	cytosol, plastid	76.19	77.86
VIT_01s0026g01880.t01	Wine grape	cytosol	77.86	77.86
KRH45870	Soybean	plastid	72.14	75.37
AT2G02800.1	Thale cress	plastid	74.29	73.24
Bra019654.1-P	Field mustard	cytosol, plastid	72.62	72.62
KRG99134	Soybean	plastid	71.9	72.6
CDY49086	Canola	cytosol, plastid	72.14	72.14
CDY39318	Canola	cytosol, plastid	71.43	71.26
CDY45196	Canola	plastid	72.38	71.19
CDY53554	Canola	plastid	71.9	70.4
CDX81634	Canola	plastid	71.67	70.16
CDY41675	Canola	plastid	74.05	70.05
AT1G14370.1	Thale cress	plastid	70.95	69.95
CDY67404	Canola	plastid	74.05	69.89
Bra026834.1-P	Field mustard	plastid	71.43	69.77
CDY03036	Canola	plastid	72.38	68.78
GSMUA_Achr1P21600_001	Banana	plastid	65.71	66.83
GSMUA_Achr2P07470_001	Banana	plastid	65.24	65.87
HORVU4Hr1G075150.2	Barley	plastid	65.0	65.47
TraesCS4A01G016800.1	Wheat	plastid	65.48	65.32
TraesCS4B01G287300.1	Wheat	plastid	65.48	65.32
TraesCS4D01G286100.1	Wheat	plastid	65.48	65.32
Os10t0405100-02	Rice	plasma membrane	65.24	64.02
EER92783	Sorghum	plastid	66.67	63.78
Bra026580.1-P	Field mustard	plastid	74.05	63.73
EER94269	Sorghum	plastid	64.76	62.82
Zm00001d033004_P004	Maize	plastid	64.29	61.93
GSMUA_Achr6P10640_001	Banana	plastid	58.81	61.14
Zm00001d048314_P001	Maize	cytosol, plastid	65.95	60.75
PGSC0003DMT400095910	Potato	cytosol	47.38	60.49
PGSC0003DMT400011261	Potato	plastid	57.38	60.1
PGSC0003DMT400071329	Potato	plastid	55.0	58.63
PGSC0003DMT400028591	Potato	plastid	55.71	56.66
PGSC0003DMT400023009	Potato	cytosol, plastid	55.24	55.77
PGSC0003DMT400082362	Potato	plastid	52.38	55.56
PGSC0003DMT400003582	Potato	cytosol	44.52	52.68
PGSC0003DMT400045075	Potato	plastid	50.95	51.57
GSMUA_Achr10P...	Banana	cytosol	67.86	50.09
PGSC0003DMT400048049	Potato	plastid	49.05	49.76
PGSC0003DMT400049853	Potato	plasma membrane	55.48	48.34
PGSC0003DMT400038068	Potato	plastid	48.1	48.33
PGSC0003DMT400025864	Potato	plastid	46.9	47.24
PGSC0003DMT400045429	Potato	cytosol	52.62	46.33
PGSC0003DMT400002229	Potato	cytosol	51.9	45.23
PGSC0003DMT400079361	Potato	cytosol	51.43	45.09

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:102594187	MapMan:18.4.1.37.1	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M1CEK9	PFAM:PF07714	EnsemblPlantsGene:PGSC0003DMG400025613
PGSC:PGSC0003DMG400025613	EnsemblPlants:PGSC0003DMT400065801	PIRSF:PIRSF000615	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR27001	PANTHER:PTHR27001:SF160	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom
InterPro:Ser/Thr_kinase_AS	UniParc:UPI0002950B46	RefSeq:XP_006363247.1	SEG:seg	:	:

Description

Protein kinase APK1B, chloroplast [Source:PGSC_GENE;Acc:PGSC0003DMG400025613]

Coordinates

chr5:+:5788929..5792414

Molecular Weight (calculated)

46209.2 Da

IEP (calculated)

10.083

GRAVY (calculated)

-0.423

Length

420 amino acids

Sequence
(BLAST)

001: MGNCVGSSAR VEATLSSTTP SAYEASRFPD RKSNSSVPSS LSIPSYGRKS SSESLPTPRS ESEILFSPNV KSFSFNELKN ATRNFRPDSL LGEGGFGCVF
101: KGWIDTQTLT ASKPGSGIVI AVKKLKPEGF QGHKEWLTEV NYLGQLRHPN LVKLIGYCID GDNHLLVYEF MPKGSLENHL FRRGPQPLNW ATRIKVAIGA
201: ARGLAFLHDA KEQVIYRDFK ASNILLDAEF NSKLSDFGLA KAGPTGDRTH VSTQVMGTQG YAAPEYVATG RLTAKSDVYS FGVVLLELLS GRRAVDNTKV
301: GIEQNLVDWA KPYLGDKRKL FRIMDTKLEG QYPQKGAYTA ANLAWQCLSN EPKLRPKMSE VLTALEELQS PKGVSKLSHT EHRAIPSPVT VSPMRHHRSP
401: LHMTPSASPL QAYQKSPRGR

Best Arabidopsis Sequence Match ( AT2G02800.1 )
(BLAST)

001: MGNCLDSSAK VDSSSHSPHA NSASLSSRVS SKTSRSTVPS SLSINSYSSV ESLPTPRTEG EILSSPNLKA FTFNELKNAT RNFRPDSLLG EGGFGYVFKG
101: WIDGTTLTAS KPGSGIVVAV KKLKTEGYQG HKEWLTEVNY LGQLSHPNLV KLVGYCVEGE NRLLVYEFMP KGSLENHLFR RGAQPLTWAI RMKVAIGAAK
201: GLTFLHDAKS QVIYRDFKAA NILLDAEFNS KLSDFGLAKA GPTGDKTHVS TQVMGTHGYA APEYVATGRL TAKSDVYSFG VVLLELLSGR RAVDKSKVGM
301: EQSLVDWATP YLGDKRKLFR IMDTRLGGQY PQKGAYTAAS LALQCLNPDA KLRPKMSEVL AKLDQLESTK PGTGVGNRQA QIDSPRGSNG SIVQKSPRRY
401: SYDRPLLHIT PGASPLPTHN HSPRVR

Arabidopsis Description

PBL3Probable serine/threonine-protein kinase PBL3 [Source:UniProtKB/Swiss-Prot;Acc:O49840]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.