Factsheet for PGSC0003DMT400071329

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g011520.2.1	Tomato	nucleus	98.98	98.98
HORVU1Hr1G004690.3	Barley	mitochondrion, plastid	55.08	71.85
KRH15106	Soybean	cytosol	3.05	70.59
GSMUA_Achr8P34290_001	Banana	plastid	69.54	69.37
PGSC0003DMT400011261	Potato	plastid	69.54	68.33
GSMUA_Achr11P...	Banana	cytosol	64.72	68.18
HORVU3Hr1G115860.6	Barley	plastid	48.73	67.13
VIT_13s0019g01080.t01	Wine grape	plastid	68.53	66.83
KRH73031	Soybean	plastid	65.74	66.07
GSMUA_Achr10P...	Banana	plastid	68.78	65.62
GSMUA_Achr6P15230_001	Banana	plastid	62.94	64.92
Os05t0110900-01	Rice	plasma membrane	64.47	64.3
EES18885	Sorghum	plastid	65.99	64.2
TraesCS7B01G448200.1	Wheat	cytosol	57.61	64.12
KRH15105	Soybean	cytosol, nucleus	61.93	64.04
KRG97912	Soybean	cytosol	62.69	63.99
TraesCS7D01G518500.1	Wheat	cytosol	56.85	63.82
GSMUA_Achr8P20820_001	Banana	cytosol, plastid	66.75	63.07
TraesCS1A01G031200.1	Wheat	plastid	64.47	63.03
TraesCS1D01G032600.1	Wheat	plastid	64.21	62.78
TraesCS1B01G038800.1	Wheat	plastid	63.96	62.38
GSMUA_Achr10P...	Banana	plastid	65.99	62.35
Zm00001d011066_P004	Maize	plastid	65.48	62.32
GSMUA_Achr8P02170_001	Banana	plastid	59.39	62.07
Os03t0274800-01	Rice	plasma membrane	58.63	61.76
TraesCS4D01G208400.1	Wheat	plastid	58.38	61.66
Os01t0973500-01	Rice	plasma membrane	63.71	61.52
TraesCS4B01G207500.1	Wheat	plastid	58.12	61.39
TraesCS4A01G096900.1	Wheat	plastid	58.12	61.39
PGSC0003DMT400023009	Potato	cytosol, plastid	64.72	61.3
PGSC0003DMT400028591	Potato	plastid	64.21	61.26
Zm00001d034662_P001	Maize	plastid	64.72	60.86
HORVU4Hr1G059750.3	Barley	plastid	58.12	60.74
TraesCS3D01G535700.1	Wheat	plastid	65.48	60.28
Os03t0821900-01	Rice	plastid	64.72	60.14
TraesCS3B01G600300.1	Wheat	plastid	65.48	60.14
TraesCS3A01G530200.1	Wheat	plastid	65.48	60.14
Zm00001d012958_P001	Maize	plastid	63.71	60.05
EER93184	Sorghum	plastid	63.45	59.81
TraesCS5D01G493800.1	Wheat	plastid	63.71	59.06
EER92482	Sorghum	plastid	56.85	58.95
TraesCS5B01G493500.1	Wheat	plastid	63.45	58.82
TraesCS5A01G480600.1	Wheat	plastid	63.45	57.87
HORVU1Hr1G004590.1	Barley	cytosol, mitochondrion	51.02	56.15
HORVU5Hr1G113300.2	Barley	mitochondrion	63.45	56.05
Zm00001d028613_P001	Maize	plastid	57.61	56.05
TraesCS7B01G449500.1	Wheat	cytosol	49.24	55.91
TraesCS7A01G532700.1	Wheat	cytosol	51.27	55.65
PGSC0003DMT400095910	Potato	cytosol	46.45	55.62
PGSC0003DMT400065801	Potato	plastid	58.63	55.0
PGSC0003DMT400002280	Potato	plastid	57.36	53.94
PGSC0003DMT400003582	Potato	cytosol	46.7	51.83
TraesCS7D01G519800.1	Wheat	cytosol	47.21	50.82
PGSC0003DMT400045075	Potato	plastid	53.3	50.6
PGSC0003DMT400082362	Potato	plastid	50.51	50.25
PGSC0003DMT400048049	Potato	plastid	51.02	48.55
TraesCS7D01G519900.2	Wheat	plastid	49.49	48.03
PGSC0003DMT400038068	Potato	plastid	50.25	47.37
PGSC0003DMT400045429	Potato	cytosol	56.35	46.54
PGSC0003DMT400002229	Potato	cytosol	56.35	46.06
PGSC0003DMT400025864	Potato	plastid	46.95	44.36
PGSC0003DMT400079361	Potato	cytosol	53.05	43.63
PGSC0003DMT400049853	Potato	plasma membrane	50.25	41.08

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:102586923	MapMan:18.4.1.37.1	MapMan:26.8.1.1.3	Gene3D:3.30.200.20	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524
GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M1CNK0	PFAM:PF00069
EnsemblPlantsGene:PGSC0003DMG400027744	PGSC:PGSC0003DMG400027744	EnsemblPlants:PGSC0003DMT400071329	PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108
PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF191	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SUPFAM:SSF56112
InterPro:Ser/Thr_kinase_AS	UniParc:UPI00029510C1	RefSeq:XP_006365700.1	:	:	:

Description

Protein kinase APK1B, chloroplast [Source:PGSC_GENE;Acc:PGSC0003DMG400027744]

Coordinates

chr4:+:7119564..7123355

Molecular Weight (calculated)

44262.1 Da

IEP (calculated)

9.931

GRAVY (calculated)

-0.413

Length

394 amino acids

Sequence
(BLAST)

001: MGSCLSVRIK AESPLHHGAS DGRELSSRHS YSSAPLTPRS QSEILELSNL NSFSFNELRV ATRNFRPDSV LGEGGFGCVF KGWIDENTFK AARPGTGLVI
101: AVKRLNQEGF QGHKEWLAEI TYLSQLSHPN LVKLIGYCLE DEHRLLVYEF MPRGSLENHL FRRSTYFQPL SWNLRMKVAL EAAKGLTYLH SPEAKVIYRD
201: FKSSNILLDA NYNAKLSDFG LAKDGPIDGK SHVSTRVMGT FGYAAPEYMA TGHITARSDV YSFGVVLLEM LTGRRVMDKN RPHGEHNLIE WAKPFLTSKR
301: KVLRIMDHRI EGQYSVEGAL RAALLAVKCL ALEPKFRPKM PEVVKALEQL QNLNESGSLK RETTQRKHHR TSTDEASGRK TTSYPRPAAS PLVT

Best Arabidopsis Sequence Match ( AT1G07570.1 )
(BLAST)

001: MGICLSAQVK AESSGASTKY DAKDIGSLGS KASSVSVRPS PRTEGEILQS PNLKSFSFAE LKSATRNFRP DSVLGEGGFG CVFKGWIDEK SLTASRPGTG
101: LVIAVKKLNQ DGWQGHQEWL AEVNYLGQFS HRHLVKLIGY CLEDEHRLLV YEFMPRGSLE NHLFRRGLYF QPLSWKLRLK VALGAAKGLA FLHSSETRVI
201: YRDFKTSNIL LDSEYNAKLS DFGLAKDGPI GDKSHVSTRV MGTHGYAAPE YLATGHLTTK SDVYSFGVVL LELLSGRRAV DKNRPSGERN LVEWAKPYLV
301: NKRKIFRVID NRLQDQYSME EACKVATLSL RCLTTEIKLR PNMSEVVSHL EHIQSLNAAI GGNMDKTDRR MRRRSDSVVS KKVNAGFARQ TAVGSTVVAY
401: PRPSASPLYV

Arabidopsis Description

APK1AProtein kinase superfamily protein [Source:TAIR;Acc:AT1G07570]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.