Factsheet for PGSC0003DMT400011261

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g005500.2.1	Tomato	nucleus	98.75	97.3
KRH23073	Soybean	cytosol, plastid	78.05	74.7
Bra031585.1-P	Field mustard	plastid	73.32	72.41
CDY06271	Canola	plastid	73.32	72.41
VIT_06s0004g04810.t01	Wine grape	plastid	79.55	72.17
CDY09904	Canola	plastid	73.07	72.17
CDY06715	Canola	plastid	73.07	71.81
CDX95143	Canola	plastid	72.57	71.32
KRH10259	Soybean	plastid	76.31	71.0
PGSC0003DMT400071329	Potato	plastid	68.33	69.54
PGSC0003DMT400028591	Potato	plastid	70.82	68.77
Bra040929.1-P	Field mustard	plastid	70.57	68.52
CDY47885	Canola	plastid	70.57	68.52
CDX77220	Canola	cytosol, plastid	70.82	67.94
CDY31741	Canola	cytosol, plastid	70.82	67.94
PGSC0003DMT400023009	Potato	cytosol, plastid	70.07	67.55
CDY39519	Canola	cytosol	66.58	67.42
AT1G07570.3	Thale cress	plastid	70.32	66.98
Bra035659.1-P	Field mustard	cytosol, plastid	69.33	66.51
CDX95754	Canola	plastid	66.83	66.34
CDX83305	Canola	plastid	66.58	66.09
AT2G28930.1	Thale cress	plasma membrane	69.33	65.72
KRH29797	Soybean	plastid	67.08	65.29
Bra015592.1-P	Field mustard	plastid	50.62	64.44
PGSC0003DMT400002280	Potato	plastid	61.1	58.47
KRH24792	Soybean	cytosol, plastid	66.83	57.88
PGSC0003DMT400065801	Potato	plastid	60.1	57.38
PGSC0003DMT400095910	Potato	cytosol	45.89	55.93
Bra000478.1-P	Field mustard	cytosol, mitochondrion	65.34	54.58
PGSC0003DMT400003582	Potato	cytosol	47.63	53.8
PGSC0003DMT400082362	Potato	plastid	52.12	52.78
PGSC0003DMT400045075	Potato	plastid	54.36	52.53
PGSC0003DMT400048049	Potato	plastid	53.62	51.93
PGSC0003DMT400038068	Potato	plastid	52.62	50.48
PGSC0003DMT400045429	Potato	cytosol	59.35	49.9
PGSC0003DMT400002229	Potato	cytosol	59.35	49.38
PGSC0003DMT400025864	Potato	plastid	50.37	48.44
PGSC0003DMT400079361	Potato	cytosol	54.86	45.93
PGSC0003DMT400049853	Potato	plasma membrane	50.87	42.32

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.37.1	MapMan:26.8.1.1.3	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M0ZZA3	PFAM:PF07714	EnsemblPlantsGene:PGSC0003DMG400004409
PGSC:PGSC0003DMG400004409	EnsemblPlants:PGSC0003DMT400011261	PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR27001	PANTHER:PTHR27001:SF191	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom
InterPro:Ser/Thr_kinase_AS	UniParc:UPI0002956577	SEG:seg	:	:	:

Description

Protein kinase 1b [Source:PGSC_GENE;Acc:PGSC0003DMG400004409]

Coordinates

chr6:-:5048260..5051643

Molecular Weight (calculated)

44564.9 Da

IEP (calculated)

10.230

GRAVY (calculated)

-0.498

Length

401 amino acids

Sequence
(BLAST)

001: MGICLSARIK AESPFHTGLN SRSVSTDGGD SNSSSRVPPT TRSEGEILQS PNLKSFSFSD LKTATRNFRP DSVLGEGGFG SVFKGWIDEN TFAATKPGTG
101: VIIAVKRLNQ EGFQGHREWL AEVNYLGQFS HPHLVKLIGY CLEDEHRLLV YEFMPRGSLE NHLFRRGSYF QPLSWKLRLK VALGAAKGLA FLHSAETKVI
201: YRDFKTSNIL LDSNYTAKLS DFGLAKDGPT GDKSHVSTRV MGTYGYAAPE YMATGHLTSK SDVYSFGVVL LEMLSGRRAI DKNRPSGEHN LVEWAKPYLG
301: NKRKVFRVLD TRLEGQYSMD VASKVANLAL RCLSKDPRFR PSMSDIVKEL EQLYQQSKDS GNTRSHASNR PRPRRRSAGD VASRNPSVAY PRPSASPLYA
401: K

Best Arabidopsis Sequence Match ( AT1G07570.1 )
(BLAST)

001: MGICLSAQVK AESSGASTKY DAKDIGSLGS KASSVSVRPS PRTEGEILQS PNLKSFSFAE LKSATRNFRP DSVLGEGGFG CVFKGWIDEK SLTASRPGTG
101: LVIAVKKLNQ DGWQGHQEWL AEVNYLGQFS HRHLVKLIGY CLEDEHRLLV YEFMPRGSLE NHLFRRGLYF QPLSWKLRLK VALGAAKGLA FLHSSETRVI
201: YRDFKTSNIL LDSEYNAKLS DFGLAKDGPI GDKSHVSTRV MGTHGYAAPE YLATGHLTTK SDVYSFGVVL LELLSGRRAV DKNRPSGERN LVEWAKPYLV
301: NKRKIFRVID NRLQDQYSME EACKVATLSL RCLTTEIKLR PNMSEVVSHL EHIQSLNAAI GGNMDKTDRR MRRRSDSVVS KKVNAGFARQ TAVGSTVVAY
401: PRPSASPLYV

Arabidopsis Description

APK1AProtein kinase superfamily protein [Source:TAIR;Acc:AT1G07570]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.