Factsheet for Solyc06g005500.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 6
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400011261	Potato	plastid	97.3	98.75
KRH23073	Soybean	cytosol, plastid	76.17	73.99
CDY06271	Canola	plastid	71.99	72.17
Bra031585.1-P	Field mustard	plastid	71.99	72.17
VIT_06s0004g04810.t01	Wine grape	plastid	78.13	71.95
CDY09904	Canola	plastid	71.5	71.67
CDY06715	Canola	plastid	71.74	71.57
CDX95143	Canola	plastid	71.25	71.08
Solyc04g011520.2.1	Tomato	nucleus	68.06	70.3
KRH10259	Soybean	plastid	74.45	70.3
Solyc10g084770.1.1	Tomato	cytosol, plastid	69.53	68.52
Bra040929.1-P	Field mustard	plastid	69.29	68.28
CDY47885	Canola	plastid	69.29	68.28
CDX77220	Canola	cytosol, plastid	69.53	67.7
CDY31741	Canola	cytosol, plastid	69.53	67.7
CDY39519	Canola	cytosol	65.36	67.17
Solyc09g010850.2.1	Tomato	cytosol, plastid	68.55	67.07
AT1G07570.3	Thale cress	plastid	68.8	66.51
Bra035659.1-P	Field mustard	cytosol, plastid	68.06	66.27
Solyc05g053930.2.1	Tomato	plastid	66.58	66.26
CDX95754	Canola	plastid	65.6	66.09
AT2G28930.1	Thale cress	plasma membrane	68.55	65.96
CDX83305	Canola	plastid	65.36	65.84
KRH29797	Soybean	plastid	65.85	65.05
Bra015592.1-P	Field mustard	plastid	49.63	64.13
Solyc01g010660.2.1	Tomato	plastid	60.2	58.47
KRH24792	Soybean	cytosol, plastid	65.6	57.67
Solyc05g007140.2.1	Tomato	plastid	58.97	57.14
Bra000478.1-P	Field mustard	cytosol, mitochondrion	64.13	54.38
Solyc01g008870.1.1	Tomato	plastid	48.89	53.07
Solyc11g062400.1.1	Tomato	plastid	51.11	52.53
Solyc01g112220.2.1	Tomato	plastid	51.6	51.22
Solyc03g032150.2.1	Tomato	plastid	52.09	50.72
Solyc12g077390.1.1	Tomato	cytosol	52.09	50.6
Solyc05g007050.2.1	Tomato	cytosol	58.48	49.79
Solyc07g007980.2.1	Tomato	nucleus	53.81	49.77
Solyc01g010780.2.1	Tomato	cytosol	58.23	49.27
Solyc04g082500.2.1	Tomato	nucleus	49.88	49.15
Solyc02g087830.2.1	Tomato	plastid	48.16	48.04
Solyc01g008860.1.1	Tomato	plastid	45.45	45.12

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.37.1	MapMan:26.8.1.1.3	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0004675	GO:GO:0004871	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006464	GO:GO:0006468
GO:GO:0007154	GO:GO:0007165	GO:GO:0007166	GO:GO:0007178	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0019538
GO:GO:0038023	InterPro:IPR000719	UniProt:K4C332	InterPro:Kinase-like_dom_sf	PFAM:PF07714	PIRSF:PIRSF000654
ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF191	InterPro:Prot_kinase_dom
InterPro:Protein_kinase_ATP_BS	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	EnsemblPlantsGene:Solyc06g005500.2	EnsemblPlants:Solyc06g005500.2.1
UniParc:UPI0002765B3C	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:+:525975..529157

Molecular Weight (calculated)

45245.9 Da

IEP (calculated)

10.294

GRAVY (calculated)

-0.459

Length

407 amino acids

Sequence
(BLAST)

001: MGICLSARIK AESPFHTGVR IIAGLNSRSV SIDGGDSNSS SRVPSTTRSE GEILQSPNLK SFSFSDLRTA TRNFRPDSVL GEGGFGSVFK GWIDENTFAA
101: TKPGTGVIIA VKRLNQEGFQ GHREWLAEVN YLGQFSHPHL VKLIGYCLED EHRLLVYEFM PRGSLENHLF RRGSYFQPLS WKLRLKVALG AAKGLAFLHS
201: AETKVIYRDF KTSNILLDSN YTAKLSDFGL AKDGPTGDKS HVSTRVMGTY GYAAPEYMAT GHLTSKSDVY SFGVVLLEML SGRRAIDKNR PSGEHNLVEW
301: AKPYLGNKRK VFRVLDTRLE GQYSMEVASK VANLALRCLS KDPRFRPSMS DIVKELEQLY QQSKDSGNTR SHASNRPRPR RRSAGDVANR NPSVAYPRPS
401: ASPLYAK

Best Arabidopsis Sequence Match ( AT1G07570.1 )
(BLAST)

001: MGICLSAQVK AESSGASTKY DAKDIGSLGS KASSVSVRPS PRTEGEILQS PNLKSFSFAE LKSATRNFRP DSVLGEGGFG CVFKGWIDEK SLTASRPGTG
101: LVIAVKKLNQ DGWQGHQEWL AEVNYLGQFS HRHLVKLIGY CLEDEHRLLV YEFMPRGSLE NHLFRRGLYF QPLSWKLRLK VALGAAKGLA FLHSSETRVI
201: YRDFKTSNIL LDSEYNAKLS DFGLAKDGPI GDKSHVSTRV MGTHGYAAPE YLATGHLTTK SDVYSFGVVL LELLSGRRAV DKNRPSGERN LVEWAKPYLV
301: NKRKIFRVID NRLQDQYSME EACKVATLSL RCLTTEIKLR PNMSEVVSHL EHIQSLNAAI GGNMDKTDRR MRRRSDSVVS KKVNAGFARQ TAVGSTVVAY
401: PRPSASPLYV

Arabidopsis Description

APK1AProtein kinase superfamily protein [Source:TAIR;Acc:AT1G07570]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.