Factsheet for Solyc04g082500.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 4
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400025864	Potato	plastid	93.95	93.05
KRH60921	Soybean	cytosol	56.9	63.51
KRH51603	Soybean	mitochondrion, plastid	55.93	62.6
VIT_18s0122g01270.t01	Wine grape	plastid	62.71	61.96
VIT_18s0122g01260.t01	Wine grape	plastid	64.65	59.6
GSMUA_Achr4P04920_001	Banana	plastid	52.3	55.96
EER95575	Sorghum	cytosol	52.3	55.38
GSMUA_Achr3P14810_001	Banana	plastid	54.96	54.7
Bra008255.1-P	Field mustard	plastid	55.93	54.35
GSMUA_Achr1P18020_001	Banana	plastid	55.21	53.15
CDX87609	Canola	cytosol	57.63	53.01
GSMUA_Achr3P26960_001	Banana	plastid	48.67	52.76
CDX88265	Canola	cytosol	56.9	52.69
CDX85943	Canola	plastid	55.69	52.39
Solyc03g032150.2.1	Tomato	plastid	52.78	52.15
Os06t0727400-01	Rice	plasma membrane	52.06	51.93
TraesCS2D01G038200.1	Wheat	cytosol	48.91	51.93
Solyc01g112220.2.1	Tomato	plastid	51.33	51.71
Bra003724.1-P	Field mustard	plastid	55.93	51.68
Os02t0118200-01	Rice	plasma membrane	53.27	51.52
Zm00001d048342_P001	Maize	plastid	50.85	51.47
CDX68102	Canola	plastid	55.21	51.47
TraesCS6A01G052100.2	Wheat	plastid	54.0	51.26
Bra015757.1-P	Field mustard	cytosol, plastid	50.36	51.23
Zm00001d054014_P002	Maize	cytosol, plastid	53.27	51.16
TraesCS6B01G069800.1	Wheat	plastid	54.0	51.15
TraesCSU01G111800.1	Wheat	plastid	54.0	51.15
EES04370	Sorghum	plastid	54.0	51.15
Zm00001d014850_P002	Maize	plastid	51.09	51.09
HORVU6Hr1G010050.1	Barley	plastid	53.75	50.92
TraesCS7B01G473700.1	Wheat	plastid	50.36	50.49
EER90433	Sorghum	plastid	51.09	50.36
Solyc06g005500.2.1	Tomato	nucleus	49.15	49.88
AT1G76360.1	Thale cress	plastid	58.35	49.79
Zm00001d026126_P001	Maize	plastid	54.96	49.78
TraesCS7A01G550300.1	Wheat	plastid	50.12	49.76
Zm00001d015012_P001	Maize	plastid	54.48	49.67
TraesCSU01G105900.1	Wheat	plastid	49.88	49.52
KXG26902	Sorghum	cytosol	55.21	49.46
GSMUA_Achr2P11330_001	Banana	cytosol	41.65	49.43
TraesCS6D01G235300.1	Wheat	cytosol	52.06	49.09
TraesCS6A01G253700.1	Wheat	cytosol	53.03	48.34
TraesCS2A01G039600.1	Wheat	cytosol	49.39	48.34
TraesCS6B01G271700.1	Wheat	cytosol	53.75	48.26
HORVU6Hr1G064690.4	Barley	cytosol	53.27	48.25
HORVU4Hr1G082100.2	Barley	cytosol, nucleus, plastid	48.91	48.21
Solyc01g008870.1.1	Tomato	plastid	43.58	48.0
Zm00001d027509_P002	Maize	cytosol	43.58	48.0
Solyc04g011520.2.1	Tomato	nucleus	45.76	47.97
Os02t0670100-00	Rice	cytosol, plasma membrane	53.51	47.84
Solyc10g084770.1.1	Tomato	cytosol, plastid	47.7	47.7
TraesCS2B01G422500.1	Wheat	cytosol	52.3	47.68
HORVU6Hr1G009900.9	Barley	mitochondrion	38.26	47.16
Solyc01g010660.2.1	Tomato	plastid	47.7	47.02
TraesCS2D01G401500.2	Wheat	cytosol	51.82	46.83
TraesCS2A01G404600.1	Wheat	cytosol	51.82	46.83
Solyc05g053930.2.1	Tomato	plastid	46.25	46.7
Solyc09g010850.2.1	Tomato	cytosol, plastid	46.97	46.63
TraesCS6A01G051600.1	Wheat	cytosol	41.89	46.13
EES05745	Sorghum	cytosol	52.78	46.09
TraesCS6B01G069300.1	Wheat	cytosol	41.89	46.01
Solyc05g007140.2.1	Tomato	plastid	46.73	45.95
Os04t0563900-00	Rice	plasma membrane	52.54	45.68
Zm00001d051424_P001	Maize	plastid	49.15	45.52
Solyc11g062400.1.1	Tomato	plastid	43.34	45.2
TraesCSU01G111300.1	Wheat	cytosol, mitochondrion, plastid	40.92	45.07
TraesCSU01G110700.2	Wheat	cytosol	40.44	44.41
Solyc07g007980.2.1	Tomato	nucleus	46.0	43.18
Solyc12g077390.1.1	Tomato	cytosol	43.34	42.72
TraesCS2B01G052500.1	Wheat	cytosol	46.97	41.99
HORVU7Hr1G121690.5	Barley	plastid	50.36	41.85
Solyc02g087830.2.1	Tomato	plastid	40.44	40.93
Solyc05g007050.2.1	Tomato	cytosol	46.0	39.75
Solyc01g008860.1.1	Tomato	plastid	39.23	39.51
Solyc01g010780.2.1	Tomato	cytosol	45.76	39.29

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.37.1	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0004674	GO:GO:0004675	GO:GO:0004871	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154
GO:GO:0007165	GO:GO:0007166	GO:GO:0007178	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0038023	InterPro:IPR000719
UniProt:K4BVX7	InterPro:Kinase-like_dom_sf	PFAM:PF07714	PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108
PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF5	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SUPFAM:SSF56112
InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	EnsemblPlantsGene:Solyc04g082500.2	EnsemblPlants:Solyc04g082500.2.1	UniParc:UPI000276668C	SEG:seg

Description

No Description!

Coordinates

chr4:-:66152655..66156822

Molecular Weight (calculated)

45638.1 Da

IEP (calculated)

10.079

GRAVY (calculated)

-0.463

Length

413 amino acids

Sequence
(BLAST)

001: MGNCWPKPVD VVPPTSNTPP PVIMKKPINT SPGSNTRSVV AQPSGDGGDS RKMEVPASGK IITPNLKMFT LAELKSATRN FRPDTVLGEG GFGTVFKGWV
101: DDKTFAPSRV GVGMPVAVKK SNADSEQGLK EWQAEVKFLG KLSHPNLVKL IGYCWEDKTF LLVYEHMQKG SLESHLFRKG AEALSWGTRL KIAIGAAKGL
201: DFLHTIEKQV IYRDFKTANI LLDSDYNAKL SDFGLAKMGP VNGDSHVTTK IVGTYGYAAP EYMATGHVYV KSDVYGFGVV LLEILSGRRV LDLNRPNGEH
301: NLVDWAKPML PDKKKLRKLM DPRLEAQYPS KAAFQIAEII LRCLEPDPKN RPSMEEILEC LEQCNGIQKK PRAKNTTRNH NHRGPRSPLH VKKTGSGNVI
401: GNQGYNAPKN RSY

Best Arabidopsis Sequence Match ( AT1G76360.1 )
(BLAST)

001: MGNICPGSGS STVNHEPVST KPLPVRRVQT PENKKFPPPL VAMPALHPTF PLPETGHKLR PAATPPREKP QHRTTRSVEN PPREKPQEKT RSVENPPREK
101: PQEKTRSVET PPQEKTRPVD NPPSKPVEKL GLGRKAVPPS GKIVTPNLKM FTLVELKTAT KNFRPESVIG EGGFGQVFKG WVDEKTLAPS RAGVGIPVAV
201: KKSNPDSEQG LHEWQCEVRF LGKFHHPNLV KLLGYCWEEN QFLLVYEYLP KGSLENHLFS KGAEALPWDT RLKIAIEAAQ GLTFLHNSEK SVIYRDFKAS
301: NILLDSNFHA KLSDFGLAKN GPINGFSHVT TRVMGTQGYA APEYMATGHL YVRSDVYGFG VVLLELLTGL RALDPNRPSA QQNLVEWAKP GLNQKKKVQK
401: MMDPRLEQKY PLLAVTKTAE LILRCLEADP KNRPPMDDVL RELEVVRTIR DQPQEERRKR SSGPDTNRVR GNDSPYGRRT GRTG

Arabidopsis Description

At1g76360 [Source:UniProtKB/TrEMBL;Acc:A4FVS9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.