Factsheet for Solyc04g011520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 7
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071329	Potato	plastid	98.98	98.98
HORVU1Hr1G004690.3	Barley	mitochondrion, plastid	55.58	72.52
KRH15106	Soybean	cytosol	3.05	70.59
GSMUA_Achr8P34290_001	Banana	plastid	69.54	69.37
GSMUA_Achr11P...	Banana	cytosol	64.97	68.45
Solyc06g005500.2.1	Tomato	nucleus	70.3	68.06
HORVU3Hr1G115860.6	Barley	plastid	49.24	67.83
VIT_13s0019g01080.t01	Wine grape	plastid	69.54	67.82
KRH73031	Soybean	plastid	66.24	66.58
GSMUA_Achr10P...	Banana	plastid	69.04	65.86
GSMUA_Achr6P15230_001	Banana	plastid	63.45	65.44
EES18885	Sorghum	plastid	66.5	64.69
TraesCS7B01G448200.1	Wheat	cytosol	58.12	64.69
KRH15105	Soybean	cytosol, nucleus	62.44	64.57
Os05t0110900-01	Rice	plasma membrane	64.72	64.56
TraesCS7D01G518500.1	Wheat	cytosol	57.36	64.39
KRG97912	Soybean	cytosol	62.94	64.25
TraesCS1A01G031200.1	Wheat	plastid	64.97	63.52
TraesCS1D01G032600.1	Wheat	plastid	64.72	63.28
GSMUA_Achr8P20820_001	Banana	cytosol, plastid	66.75	63.07
TraesCS1B01G038800.1	Wheat	plastid	64.47	62.87
GSMUA_Achr10P...	Banana	plastid	66.24	62.59
Zm00001d011066_P004	Maize	plastid	65.74	62.56
TraesCS4D01G208400.1	Wheat	plastid	59.14	62.47
GSMUA_Achr8P02170_001	Banana	plastid	59.64	62.33
TraesCS4B01G207500.1	Wheat	plastid	58.88	62.2
TraesCS4A01G096900.1	Wheat	plastid	58.88	62.2
Os03t0274800-01	Rice	plasma membrane	58.88	62.03
HORVU4Hr1G059750.3	Barley	plastid	58.88	61.54
Solyc10g084770.1.1	Tomato	cytosol, plastid	64.21	61.26
Solyc09g010850.2.1	Tomato	cytosol, plastid	64.47	61.06
Os01t0973500-01	Rice	plasma membrane	63.2	61.03
Zm00001d034662_P001	Maize	plastid	64.72	60.86
TraesCS3D01G535700.1	Wheat	plastid	65.99	60.75
TraesCS3A01G530200.1	Wheat	plastid	65.99	60.61
TraesCS3B01G600300.1	Wheat	plastid	65.99	60.61
EER93184	Sorghum	plastid	63.96	60.29
Os03t0821900-01	Rice	plastid	64.72	60.14
Zm00001d012958_P001	Maize	plastid	63.71	60.05
Solyc05g053930.2.1	Tomato	plastid	62.18	59.9
EER92482	Sorghum	plastid	57.11	59.21
TraesCS5D01G493800.1	Wheat	plastid	63.71	59.06
TraesCS5B01G493500.1	Wheat	plastid	63.45	58.82
TraesCS5A01G480600.1	Wheat	plastid	63.45	57.87
HORVU1Hr1G004590.1	Barley	cytosol, mitochondrion	51.78	56.98
Zm00001d028613_P001	Maize	plastid	57.87	56.3
HORVU5Hr1G113300.2	Barley	mitochondrion	63.45	56.05
TraesCS7A01G532700.1	Wheat	cytosol	51.02	55.37
TraesCS7B01G449500.1	Wheat	cytosol	48.73	55.33
Solyc05g007140.2.1	Tomato	plastid	58.63	55.0
Solyc01g010660.2.1	Tomato	plastid	57.87	54.42
Solyc01g008870.1.1	Tomato	plastid	48.98	51.47
TraesCS7D01G519800.1	Wheat	cytosol	47.21	50.82
Solyc11g062400.1.1	Tomato	plastid	50.51	50.25
Solyc12g077390.1.1	Tomato	cytosol	53.05	49.88
TraesCS7D01G519900.2	Wheat	plastid	50.0	48.52
Solyc01g112220.2.1	Tomato	plastid	50.0	48.05
Solyc03g032150.2.1	Tomato	plastid	50.76	47.85
Solyc07g007980.2.1	Tomato	nucleus	53.05	47.5
Solyc05g007050.2.1	Tomato	cytosol	56.85	46.86
Solyc02g087830.2.1	Tomato	plastid	48.22	46.57
Solyc01g010780.2.1	Tomato	cytosol	56.09	45.95
Solyc04g082500.2.1	Tomato	nucleus	47.97	45.76
Solyc01g008860.1.1	Tomato	plastid	44.92	43.17

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.37.1	MapMan:26.8.1.1.3	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0004675	GO:GO:0004871	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006464	GO:GO:0006468
GO:GO:0007154	GO:GO:0007165	GO:GO:0007166	GO:GO:0007178	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0038023
InterPro:IPR000719	UniProt:K4BPK5	InterPro:Kinase-like_dom_sf	PFAM:PF00069	PIRSF:PIRSF000654	ScanProsite:PS00107
ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF191	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS
SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	EnsemblPlantsGene:Solyc04g011520.2	EnsemblPlants:Solyc04g011520.2.1	UniParc:UPI0002765FE7	:

Description

No Description!

Coordinates

chr4:+:3956690..3961315

Molecular Weight (calculated)

44261.1 Da

IEP (calculated)

9.923

GRAVY (calculated)

-0.429

Length

394 amino acids

Sequence
(BLAST)

001: MGSCLSVRIK AESPLHHGAS DGRELSSRHS YSSAPLTPRS QSEILESSNL KSFSFNELRV ATRNFRPDSV LGEGGFGCVF KGWIDENTFK AARPGTGLVI
101: AVKRLNQEGF QGHKEWLAEI TYLSQLSHPN LVKLIGYCLE DEHRLLVYEF MPRGSLENHL FRRSTYFQPL SWNLRMKVAL EAAKGLTYLH SPEAKVIYRD
201: FKSSNILLDA NYNAKLSDFG LAKDGPIDGK SHVSTRVMGT FGYAAPEYMA TGHITTRSDV YSFGVVLLEM LTGRRVMDKN RPHGEHNLIE WAKPFLTSKR
301: KVLHIMDHRI EGQYSVEGAL RAALLAVKCL ALEPKFRPKM PEVVKALEQL QNLNESGSLK RETTQRKHHR TSTDEASGRK TTSYPRPAAS PLVT

Best Arabidopsis Sequence Match ( AT1G07570.1 )
(BLAST)

001: MGICLSAQVK AESSGASTKY DAKDIGSLGS KASSVSVRPS PRTEGEILQS PNLKSFSFAE LKSATRNFRP DSVLGEGGFG CVFKGWIDEK SLTASRPGTG
101: LVIAVKKLNQ DGWQGHQEWL AEVNYLGQFS HRHLVKLIGY CLEDEHRLLV YEFMPRGSLE NHLFRRGLYF QPLSWKLRLK VALGAAKGLA FLHSSETRVI
201: YRDFKTSNIL LDSEYNAKLS DFGLAKDGPI GDKSHVSTRV MGTHGYAAPE YLATGHLTTK SDVYSFGVVL LELLSGRRAV DKNRPSGERN LVEWAKPYLV
301: NKRKIFRVID NRLQDQYSME EACKVATLSL RCLTTEIKLR PNMSEVVSHL EHIQSLNAAI GGNMDKTDRR MRRRSDSVVS KKVNAGFARQ TAVGSTVVAY
401: PRPSASPLYV

Arabidopsis Description

APK1AProtein kinase superfamily protein [Source:TAIR;Acc:AT1G07570]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.