Factsheet for VIT_06s0004g04810.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400011261	Potato	plastid	72.17	79.55
Solyc06g005500.2.1	Tomato	nucleus	71.95	78.13
KRH23073	Soybean	cytosol, plastid	73.08	77.09
VIT_13s0019g01080.t01	Wine grape	plastid	67.42	73.76
KRH10259	Soybean	plastid	71.72	73.55
CDY06715	Canola	plastid	67.19	72.79
CDY09904	Canola	plastid	66.52	72.41
VIT_08s0007g00420.t01	Wine grape	plastid	66.29	72.35
CDX95143	Canola	plastid	66.74	72.3
CDY06271	Canola	plastid	66.29	72.17
Bra031585.1-P	Field mustard	plastid	66.29	72.17
CDX77220	Canola	cytosol, plastid	66.74	70.57
CDY31741	Canola	cytosol, plastid	66.74	70.57
Bra040929.1-P	Field mustard	plastid	65.84	70.46
CDY47885	Canola	plastid	65.84	70.46
KRH29797	Soybean	plastid	65.16	69.9
Bra035659.1-P	Field mustard	cytosol, plastid	65.38	69.14
CDY39519	Canola	cytosol	61.76	68.94
AT1G07570.3	Thale cress	plastid	65.38	68.65
CDX95754	Canola	plastid	62.67	68.56
AT2G28930.1	Thale cress	plasma membrane	65.16	68.09
CDX83305	Canola	plastid	62.22	68.07
Bra015592.1-P	Field mustard	plastid	47.51	66.67
KRH24792	Soybean	cytosol, plastid	64.25	61.34
VIT_01s0026g01880.t01	Wine grape	cytosol	57.47	60.48
Bra000478.1-P	Field mustard	cytosol, mitochondrion	61.09	56.25
VIT_06s0009g01810.t01	Wine grape	plastid	47.74	52.36
VIT_04s0044g00050.t01	Wine grape	plastid	35.29	51.32
VIT_03s0038g03800.t01	Wine grape	plastid	48.87	50.7
VIT_11s0016g05720.t01	Wine grape	cytosol	49.09	50.58
VIT_14s0108g00380.t01	Wine grape	cytosol	52.71	49.05
VIT_01s0026g01620.t01	Wine grape	cytosol	52.71	48.44
VIT_18s0122g01270.t01	Wine grape	plastid	45.48	48.09
VIT_18s0122g01260.t01	Wine grape	plastid	47.06	46.43

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100253466	wikigene:100253466	MapMan:18.4.1.37.1	MapMan:26.8.1.1.3	Gene3D:3.30.200.20
ProteinID:CCB43567	ProteinID:CCB43567.1	UniProt:F6GV08	EMBL:FN594951	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0004675	GO:GO:0004871	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006464	GO:GO:0006468
GO:GO:0007154	GO:GO:0007165	GO:GO:0007166	GO:GO:0007178	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0038023
InterPro:IPR000719	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100253466	wikigene:LOC100253466	PFAM:PF00069	PIRSF:PIRSF000615
ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF191	InterPro:Prot_kinase_dom
InterPro:Protein_kinase_ATP_BS	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	TIGR:TC53171	TIGR:TC64063	UniParc:UPI00015C75FB
ArrayExpress:VIT_06s0004g04810	EnsemblPlantsGene:VIT_06s0004g04810	EnsemblPlants:VIT_06s0004g04810.t01	RefSeq:XP_002283646	RefSeq:XP_002283646.2	RefSeq:XP_010651014.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:5730790..5734591

Molecular Weight (calculated)

48989.2 Da

IEP (calculated)

9.646

GRAVY (calculated)

-0.495

Length

442 amino acids

Sequence
(BLAST)

001: MGVCLSARIK AESPCHTGGS SKYVSTDGNE QNSTSSKVSV ASVPPTPRSE GDILQSPNLK NFTFSELKMA TRNFRPDSVL GEGGFGSVFK GWIDEQSFAA
101: ARPGTGMVIA VKRLNLESFQ GHKEWLAEVN YLGQLYHPHL VKLIGFCSED EHRLLVYEFM PRGSLENHLF RRGSYFQPLS WNLRLKVALG AAKGLAFLHS
201: AETKVIYRDF KTSNILLDSN YNAKLSDFGL AKDGPTGDKS HVSTRVMGTY GYAAPEYLAT GHLTARSDVY SFGVVLLEML SGRRAVDKNR PSGEHNLVEW
301: AKPYLANKRK IFRILDNRLE GQYSLEGAHK ASNLALRCLS TEAKFRPTMT EVVTALEQLQ DCKEPEITNN RSGGMKHRRR SADDVRNEKP PIATPYPLSA
401: DDARKEKPVI PSAHPQSADY AKKEKPTTAI AYPRPSASPL YT

Best Arabidopsis Sequence Match ( AT1G07570.1 )
(BLAST)

001: MGICLSAQVK AESSGASTKY DAKDIGSLGS KASSVSVRPS PRTEGEILQS PNLKSFSFAE LKSATRNFRP DSVLGEGGFG CVFKGWIDEK SLTASRPGTG
101: LVIAVKKLNQ DGWQGHQEWL AEVNYLGQFS HRHLVKLIGY CLEDEHRLLV YEFMPRGSLE NHLFRRGLYF QPLSWKLRLK VALGAAKGLA FLHSSETRVI
201: YRDFKTSNIL LDSEYNAKLS DFGLAKDGPI GDKSHVSTRV MGTHGYAAPE YLATGHLTTK SDVYSFGVVL LELLSGRRAV DKNRPSGERN LVEWAKPYLV
301: NKRKIFRVID NRLQDQYSME EACKVATLSL RCLTTEIKLR PNMSEVVSHL EHIQSLNAAI GGNMDKTDRR MRRRSDSVVS KKVNAGFARQ TAVGSTVVAY
401: PRPSASPLYV

Arabidopsis Description

APK1AProtein kinase superfamily protein [Source:TAIR;Acc:AT1G07570]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.