Factsheet for VIT_01s0026g01880.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14370.1	VIT_06s0009g01910.t01	AT2G41090.1	17360592
AT1G14370.1	VIT_08s0040g00470.t01	AT2G41090.1	17360592
AT1G14370.1	VIT_06s0009g01910.t01	AT5G21274.1	17360592
AT1G14370.1	VIT_08s0040g00470.t01	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74810	Soybean	cytosol, plastid	82.38	84.18
KRH69316	Soybean	cytosol, plastid	82.14	83.94
KRH45870	Soybean	plastid	77.14	80.6
Solyc01g010660.2.1	Tomato	plastid	78.81	79.0
PGSC0003DMT400002280	Potato	plastid	77.86	78.04
Solyc05g007140.2.1	Tomato	plastid	77.86	77.86
PGSC0003DMT400065801	Potato	plastid	77.86	77.86
KRG99134	Soybean	plastid	76.9	77.64
Bra019654.1-P	Field mustard	cytosol, plastid	75.48	75.48
CDY49086	Canola	cytosol, plastid	75.24	75.24
AT2G02800.1	Thale cress	plastid	76.19	75.12
CDY39318	Canola	cytosol, plastid	74.52	74.35
CDY45196	Canola	plastid	75.0	73.77
CDY53554	Canola	plastid	75.24	73.66
CDX81634	Canola	plastid	75.0	73.43
Bra026834.1-P	Field mustard	plastid	74.76	73.02
AT1G14370.1	Thale cress	plastid	74.05	73.0
CDY67404	Canola	plastid	76.43	72.13
CDY41675	Canola	plastid	76.19	72.07
CDY03036	Canola	plastid	75.0	71.27
HORVU4Hr1G075150.2	Barley	plastid	70.48	70.98
TraesCS4D01G286100.1	Wheat	plastid	70.95	70.78
TraesCS4B01G287300.1	Wheat	plastid	70.95	70.78
TraesCS4A01G016800.1	Wheat	plastid	70.95	70.78
GSMUA_Achr1P21600_001	Banana	plastid	69.29	70.46
Os10t0405100-02	Rice	plasma membrane	70.48	69.16
EER92783	Sorghum	plastid	71.9	68.79
EER94269	Sorghum	plastid	69.29	67.21
GSMUA_Achr2P07470_001	Banana	plastid	66.19	66.83
Zm00001d033004_P004	Maize	plastid	69.29	66.74
Zm00001d048314_P001	Maize	cytosol, plastid	71.43	65.79
Bra026580.1-P	Field mustard	plastid	76.43	65.78
GSMUA_Achr6P10640_001	Banana	plastid	62.38	64.85
VIT_08s0007g00420.t01	Wine grape	plastid	59.05	61.23
VIT_06s0009g01810.t01	Wine grape	plastid	56.67	59.06
VIT_13s0019g01080.t01	Wine grape	plastid	56.19	58.42
VIT_06s0004g04810.t01	Wine grape	plastid	60.48	57.47
VIT_04s0044g00050.t01	Wine grape	plastid	39.05	53.95
GSMUA_Achr10P...	Banana	cytosol	71.43	52.72
VIT_03s0038g03800.t01	Wine grape	plastid	50.71	50.0
VIT_11s0016g05720.t01	Wine grape	cytosol	49.76	48.72
VIT_01s0026g01620.t01	Wine grape	cytosol	54.76	47.82
VIT_18s0122g01270.t01	Wine grape	plastid	46.9	47.13
VIT_14s0108g00380.t01	Wine grape	cytosol	52.86	46.74
VIT_18s0122g01260.t01	Wine grape	plastid	48.33	45.31

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100253317	wikigene:100253317	MapMan:18.4.1.37.1	Gene3D:3.30.200.20	ProteinID:CBI31995
ProteinID:CBI31995.3	UniProt:D7TNC2	EMBL:FN596002	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0004674	GO:GO:0004675	GO:GO:0004871	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154
GO:GO:0007165	GO:GO:0007166	GO:GO:0007178	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0038023	InterPro:IPR000719
InterPro:Kinase-like_dom_sf	EntrezGene:LOC100253317	wikigene:LOC100253317	PFAM:PF07714	PIRSF:PIRSF000615	ScanProsite:PS00107
ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF160	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS
SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	TIGR:TC61899	UniParc:UPI00015CBEF9	ArrayExpress:VIT_01s0026g01880
EnsemblPlantsGene:VIT_01s0026g01880	EnsemblPlants:VIT_01s0026g01880.t01	unigene:Vvi.10070	RefSeq:XP_002277256	RefSeq:XP_002277256.1	SEG:seg

Description

No Description!

Coordinates

chr1:-:11234546..11239260

Molecular Weight (calculated)

46141.1 Da

IEP (calculated)

10.079

GRAVY (calculated)

-0.375

Length

420 amino acids

Sequence
(BLAST)

001: MGNCLDSSAR VDSTQSSHTT SASGASKVVS KTSNSSAPST LTVPSYSERS TAESFPTPRS EGEILPSPSL KAFSFNDLKN ATRNFRPDSL LGEGGFGYVF
101: KGWIDEQTLA AVKPGSGMVI AVKKLKPEGF QGHKEWLTEV NYLGQLHHPN LVKLIGYCLE GENRLLVYEF MPKGSLENHL FRRGPQPLSW AVRIRVAIGA
201: ARGLSFLHDA ESQVIYRDFK ASNILLDAEF NAKLSDFGLA KAGPTGDRTH VSTQVMGTHG YAAPEYVATG RLTAKSDVYS FGVVLLELLS GRRAVDKTKI
301: GVEQNLVDWA KPYLGDKRRL FRIMDTKLEG QYPQKGAFMA ATLALQCLNT EAKVRPRMSE VLATLEQIQS PKNAAKHIQS EQHTVSIPVQ KSPLRQQHSP
401: LNLTPRASPL PSYRQSPRVR

Best Arabidopsis Sequence Match ( AT2G02800.1 )
(BLAST)

001: MGNCLDSSAK VDSSSHSPHA NSASLSSRVS SKTSRSTVPS SLSINSYSSV ESLPTPRTEG EILSSPNLKA FTFNELKNAT RNFRPDSLLG EGGFGYVFKG
101: WIDGTTLTAS KPGSGIVVAV KKLKTEGYQG HKEWLTEVNY LGQLSHPNLV KLVGYCVEGE NRLLVYEFMP KGSLENHLFR RGAQPLTWAI RMKVAIGAAK
201: GLTFLHDAKS QVIYRDFKAA NILLDAEFNS KLSDFGLAKA GPTGDKTHVS TQVMGTHGYA APEYVATGRL TAKSDVYSFG VVLLELLSGR RAVDKSKVGM
301: EQSLVDWATP YLGDKRKLFR IMDTRLGGQY PQKGAYTAAS LALQCLNPDA KLRPKMSEVL AKLDQLESTK PGTGVGNRQA QIDSPRGSNG SIVQKSPRRY
401: SYDRPLLHIT PGASPLPTHN HSPRVR

Arabidopsis Description

PBL3Probable serine/threonine-protein kinase PBL3 [Source:UniProtKB/Swiss-Prot;Acc:O49840]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.