CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

nucleus 2
plastid 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX92401
CDX95314
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14370.1	CDX73678	AT3G51920.1	17360592
AT1G14370.1	CDX95314	AT3G51920.1	17360592
AT1G14370.1	CDY23174	AT3G51920.1	17360592
AT1G14370.1	CDX92401	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49086	Canola	cytosol, plastid	96.67	96.9
CDY53554	Canola	plastid	90.26	88.58
CDX81634	Canola	plastid	90.02	88.34
AT1G14370.1	Thale cress	plastid	88.36	87.32
CDY45196	Canola	plastid	80.28	79.16
CDY41675	Canola	plastid	81.47	77.25
CDY03036	Canola	plastid	80.52	76.7
CDY67404	Canola	plastid	81.0	76.63
VIT_01s0026g01880.t01	Wine grape	cytosol	74.35	74.52
KRH74810	Soybean	cytosol, plastid	72.45	74.21
KRH69316	Soybean	cytosol, plastid	72.45	74.21
KRH45870	Soybean	plastid	70.07	73.38
Solyc01g010660.2.1	Tomato	plastid	71.73	72.08
PGSC0003DMT400002280	Potato	plastid	71.73	72.08
PGSC0003DMT400065801	Potato	plastid	71.26	71.43
Solyc05g007140.2.1	Tomato	plastid	71.02	71.19
KRG99134	Soybean	plastid	70.31	71.15
CDY11655	Canola	plastid	62.47	66.75
CDY38760	Canola	plastid	62.47	66.75
GSMUA_Achr1P21600_001	Banana	plastid	65.32	66.59
HORVU4Hr1G075150.2	Barley	plastid	65.56	66.19
TraesCS4A01G016800.1	Wheat	plastid	66.03	66.03
TraesCS4B01G287300.1	Wheat	plastid	66.03	66.03
TraesCS4D01G286100.1	Wheat	plastid	66.03	66.03
CDY52768	Canola	plastid	61.76	65.33
EER92783	Sorghum	plastid	67.7	64.92
CDY46426	Canola	plastid	62.23	63.9
Os10t0405100-02	Rice	plasma membrane	64.85	63.78
Zm00001d048314_P001	Maize	cytosol, plastid	67.7	62.5
GSMUA_Achr6P10640_001	Banana	plastid	59.62	62.13
EER94269	Sorghum	plastid	63.9	62.12
GSMUA_Achr2P07470_001	Banana	plastid	60.81	61.54
Zm00001d033004_P004	Maize	plastid	63.18	61.01
CDY06271	Canola	plastid	56.06	58.13
CDY02940	Canola	cytosol	48.22	58.0
CDY09904	Canola	plastid	55.82	57.88
CDY06715	Canola	plastid	56.06	57.84
CDX95143	Canola	plastid	56.06	57.84
CDX76093	Canola	cytosol, plastid	47.98	57.71
CDY10453	Canola	plastid	52.73	56.92
CDY40347	Canola	plastid	52.73	56.92
CDY48100	Canola	plastid	52.02	56.44
CDY04848	Canola	plastid	51.54	55.93
CDY39519	Canola	cytosol	52.26	55.56
CDY55560	Canola	plastid	51.07	54.99
CDX80814	Canola	plastid	51.07	54.99
CDY47885	Canola	plastid	53.68	54.72
CDY31741	Canola	cytosol, plastid	54.16	54.55
CDX77220	Canola	cytosol, plastid	54.16	54.55
CDX83305	Canola	plastid	51.31	53.47
CDX74847	Canola	cytosol	48.46	53.4
CDX95754	Canola	plastid	51.07	53.22
CDY24954	Canola	plastid	49.41	52.93
CDY40221	Canola	plastid	48.22	52.86
CDY07643	Canola	plastid	49.17	52.67
CDY20465	Canola	cytosol	48.22	52.59
CDY07022	Canola	plastid	47.51	52.49
CDX93249	Canola	plastid	47.51	52.22
GSMUA_Achr10P...	Banana	cytosol	66.27	49.03
CDY47489	Canola	plastid	47.27	48.3
CDY31372	Canola	plastid	47.03	48.29
CDX71350	Canola	plastid	46.56	47.8
CDY26797	Canola	plastid	47.03	47.6
CDY40618	Canola	plastid	42.99	46.53
CDX72550	Canola	plastid	42.76	45.92
CDY24816	Canola	cytosol, plastid	38.72	44.41
CDY47249	Canola	cytosol	49.64	44.37
CDY04026	Canola	cytosol	49.64	44.09
CDY24815	Canola	plastid	44.18	44.08
CDX69153	Canola	plastid	44.89	43.95
CDX75515	Canola	plastid	44.42	43.79
CDY59664	Canola	cytosol	49.64	43.63
CDY41645	Canola	plastid	43.71	43.6
CDX72549	Canola	plastid	44.89	43.45
CDY49042	Canola	cytosol	49.64	43.27
CDY37534	Canola	nucleus	49.64	42.83
CDY40619	Canola	plastid	44.18	42.76
CDX78606	Canola	nucleus	51.07	42.66
CDX70589	Canola	nucleus	50.83	42.46
CDY28689	Canola	nucleus	48.93	42.3
CDX85943	Canola	plastid	43.94	42.14
CDX87609	Canola	cytosol	44.42	41.65
CDX68102	Canola	plastid	43.71	41.53
CDX88265	Canola	cytosol	43.94	41.48
CDY00122	Canola	cytosol	49.17	28.16
CDY65043	Canola	cytosol	50.83	13.54

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.37.1	Gene3D:3.30.200.20	GO:A0A078HRD6	UniProt:A0A078HRD6	EnsemblPlants:CDY39318
ProteinID:CDY39318	ProteinID:CDY39318.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00067736001
InterPro:IPR000719	InterPro:Kinase-like_dom_sf	PFAM:PF07714	PIRSF:PIRSF000615	ScanProsite:PS00107	ScanProsite:PS00108
PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF160	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SUPFAM:SSF56112
InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0004EF316E	SEG:seg	:	:

Description

BnaC05g10610DBnaC05g10610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HRD6]

Coordinates

chrLK032445:-:117991..120046

Molecular Weight (calculated)

45578.4 Da

IEP (calculated)

9.914

GRAVY (calculated)

-0.278

Length

421 amino acids

Sequence
(BLAST)

001: MGNCLDSSAK VDNSSHNSAS SASKVSSNTS RSTVPLSTSS YSTGNSSLGS LPTHHRTEGE ILSSPNLKAF SFNELKNATK NFRPDSLLGE GGFGCVFKGW
101: IDETTLTASR PGSGIVVAVK KLKPEGFQGH KEWLTEVNYL GQLIHPNLVL LIGYCSEGQN RLLVYEFMPK GSLENHLFRR GAQPLTWAIR MKVAVGAAKG
201: LTFLHEAKSQ VIYRDFKAAN ILLDAEFNAK LSDFGLAKAG PTGDATHVST NVIGTHGYAA PEYVATGLLT VKSDVYSFGV VLLELISGRR AMDTSNGGVE
301: YSLVDWAKPY LDDKRKLFRI MDTKLGGQYP QKGAYAAATL ALQCLNPEAK LRPKMSVVLS TLEQLEAAAK PGTKHTESPR ARYSSAIMQK SPVRYSQDRP
401: LLNVTPGASP LPSYSRSPRV R

Best Arabidopsis Sequence Match ( AT1G14370.1 )
(BLAST)

001: MGNCLDSSAK VDNSNHSPHA NSASSGSKVS SKTSRSTGPS GLSTTSYSTD SSFGPLPTLR TEGEILSSPN LKAFTFNELK NATKNFRQDN LLGEGGFGCV
101: FKGWIDQTSL TASRPGSGIV VAVKQLKPEG FQGHKEWLTE VNYLGQLSHP NLVLLVGYCA EGENRLLVYE FMPKGSLENH LFRRGAQPLT WAIRMKVAVG
201: AAKGLTFLHE AKSQVIYRDF KAANILLDAD FNAKLSDFGL AKAGPTGDNT HVSTKVIGTH GYAAPEYVAT GRLTAKSDVY SFGVVLLELI SGRRAMDNSN
301: GGNEYSLVDW ATPYLGDKRK LFRIMDTKLG GQYPQKGAFT AANLALQCLN PDAKLRPKMS EVLVTLEQLE SVAKPGTKHT QMESPRFHHS SVMQKSPVRY
401: SHDRPLLHMT PGASPLPSYT QSPRVR

Arabidopsis Description

PBL2PBL2 [Source:UniProtKB/TrEMBL;Acc:A0A178WI52]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.