CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76093	Canola	cytosol, plastid	96.86	96.86
CDY40221	Canola	plastid	89.43	81.51
AT3G55450.2	Thale cress	plasma membrane, plastid	85.71	70.42
CDY07022	Canola	plastid	74.29	68.24
CDY24954	Canola	plastid	76.0	67.68
CDX93249	Canola	plastid	74.0	67.62
CDY07643	Canola	plastid	75.43	67.18
CDX74847	Canola	cytosol	73.14	67.02
CDY20465	Canola	cytosol	72.57	65.8
CDY55560	Canola	plastid	60.86	54.48
CDY40347	Canola	plastid	60.29	54.1
CDX80814	Canola	plastid	60.29	53.96
CDY10453	Canola	plastid	59.71	53.59
CDY48100	Canola	plastid	59.14	53.35
CDY04848	Canola	plastid	58.86	53.09
CDY06715	Canola	plastid	60.57	51.96
CDY06271	Canola	plastid	60.0	51.72
CDY09904	Canola	plastid	59.71	51.48
CDX95143	Canola	plastid	60.0	51.47
CDY39519	Canola	cytosol	57.43	50.76
CDY38760	Canola	plastid	56.57	50.25
CDY11655	Canola	plastid	56.57	50.25
CDY52768	Canola	plastid	56.86	50.0
CDY47885	Canola	plastid	58.86	49.88
CDX77220	Canola	cytosol, plastid	58.86	49.28
CDY31741	Canola	cytosol, plastid	58.86	49.28
CDY49086	Canola	cytosol, plastid	58.86	49.05
CDY46426	Canola	plastid	57.14	48.78
CDX95754	Canola	plastid	56.29	48.76
CDX83305	Canola	plastid	56.0	48.51
CDY39318	Canola	cytosol, plastid	58.0	48.22
CDY45196	Canola	plastid	58.29	47.78
CDY53554	Canola	plastid	58.0	47.32
CDX81634	Canola	plastid	57.71	47.09
CDY67404	Canola	plastid	58.86	46.29
CDY41675	Canola	plastid	58.57	46.17
CDY03036	Canola	plastid	58.29	46.15
CDY40618	Canola	plastid	49.71	44.73
CDY24816	Canola	cytosol, plastid	45.71	43.6
CDY31372	Canola	plastid	50.57	43.17
CDY41645	Canola	plastid	52.0	43.13
CDX72550	Canola	plastid	48.29	43.11
CDX72549	Canola	plastid	53.43	42.99
CDX71350	Canola	plastid	50.29	42.93
CDY24815	Canola	plastid	51.71	42.89
CDY40619	Canola	plastid	53.14	42.76
CDY47489	Canola	plastid	50.29	42.72
CDY26797	Canola	plastid	50.57	42.55
CDX75515	Canola	plastid	51.14	41.92
CDX69153	Canola	plastid	51.14	41.63
CDY47249	Canola	cytosol	53.71	39.92
CDY59664	Canola	cytosol	54.57	39.87
CDY04026	Canola	cytosol	53.43	39.45
CDY49042	Canola	cytosol	53.14	38.51
CDY28689	Canola	nucleus	53.14	38.19
CDY37534	Canola	nucleus	53.14	38.11
CDX78606	Canola	nucleus	54.86	38.1
CDX70589	Canola	nucleus	54.57	37.9
CDX85943	Canola	plastid	46.86	37.36
CDX68102	Canola	plastid	47.14	37.25
CDX87609	Canola	cytosol	47.43	36.97
CDX88265	Canola	cytosol	46.57	36.55
CDY00122	Canola	cytosol	53.71	25.58
CDY65043	Canola	cytosol	55.14	12.21

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.37.1	MapMan:26.8.1.1.3	Gene3D:3.30.200.20	GO:A0A078ELQ0	EnsemblPlants:CDY02940
ProteinID:CDY02940	ProteinID:CDY02940.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00115211001	InterPro:IPR000719
InterPro:Kinase-like_dom_sf	PFAM:PF07714	PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR27001	PANTHER:PTHR27001:SF276	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112
InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0004EEA8DF	SEG:seg	:	:

Description

BnaC04g25460D

Coordinates

chrLK031938:+:717778..719701

Molecular Weight (calculated)

38737.4 Da

IEP (calculated)

8.449

GRAVY (calculated)

-0.219

Length

350 amino acids

Sequence
(BLAST)

001: MGSCLSSRVD HKSSSNLDDL HLSSCQSPSS AADKREGEIL SKANVKSFTF NELKLATRNF RPDSVVGEGG FGSVYRGWID QTTFAPTKSS SGLLVAVKSL
101: NPDGFQGHRE WLTEINYLGQ LSHPNLVKLI GYCLEDEHRL LVYEFMHKGS LEDHLFTNDV KCKPLSWLLR VKVALDAAKG LAFLHSGPVK VIYRDIKASN
201: ILLDSDFNGK LSDFGLARDG PMGEKSYVST RVMGTFGYAA PEYVSTGHLN AKSDVYSFGV VLLEILSGRQ ALDHSLPTKE QNLVDWARPY LTSKRKVLLM
301: VDTRINSQYK PDEAVRMASI AVQCISSEPK SRPTMDQVVR ALIQLQASMV

Best Arabidopsis Sequence Match ( AT3G55450.1 )
(BLAST)

001: MGSCLSSRVL NKSSSGLDDL HLSSCKSSSS ATAHKTEGEI LSSTTVKSFS FNELKLATRN FRSDSVVGEG GFGCVFRGWL DETTLTPTKS SSGLVIAVKR
101: LNPDGFQGHR EWLTEINYLG QLSHPNLVKL IGYCLEDEQR LLVYEFMHKG SLENHLFANG NKDFKPLSWI LRIKVALDAA KGLAFLHSDP VKVIYRDIKA
201: SNILLDSDFN AKLSDFGLAR DGPMGEQSYV STRVMGTFGY AAPEYVSTGH LNARSDVYSF GVVLLELLCG RQALDHNRPA KEQNLVDWAR PYLTSRRKVL
301: LIVDTRLNSQ YKPEGAVRLA SIAVQCLSFE PKSRPTMDQV VRALVQLQDS VVKPANVDPL KVKDTKKLVG LKTEDKYQRN GLNKKTVGL

Arabidopsis Description

PBL1PBS1-like 1 [Source:UniProtKB/TrEMBL;Acc:F4IWV6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.