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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • plastid 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDY06478

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G39660.1 CDY06478 AT4G14640.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra005027.1-P Field mustard cytosol 97.15 98.17
CDX74847 Canola cytosol 97.15 98.17
CDY24954 Canola plastid 89.38 87.79
CDY07643 Canola plastid 89.12 87.53
AT2G39660.1 Thale cress plastid 86.27 84.3
CDY07022 Canola plastid 82.64 83.73
CDX93249 Canola plastid 82.38 83.03
CDY02940 Canola cytosol 65.8 72.57
CDX76093 Canola cytosol, plastid 65.54 72.29
CDY40221 Canola plastid 70.73 71.09
CDY40347 Canola plastid 56.99 56.41
CDY06715 Canola plastid 58.81 55.64
CDX95143 Canola plastid 58.81 55.64
CDY55560 Canola plastid 56.22 55.5
CDY06271 Canola plastid 58.29 55.42
CDY09904 Canola plastid 58.03 55.17
CDY10453 Canola plastid 55.7 55.13
CDY39519 Canola cytosol 56.22 54.8
CDX80814 Canola plastid 55.44 54.73
CDY47885 Canola plastid 58.55 54.72
CDY48100 Canola plastid 54.66 54.38
CDX95754 Canola plastid 56.74 54.21
CDY04848 Canola plastid 54.4 54.12
CDY31741 Canola cytosol, plastid 58.55 54.07
CDX77220 Canola cytosol, plastid 58.55 54.07
CDX83305 Canola plastid 56.48 53.96
CDY52768 Canola plastid 51.55 50.0
CDY38760 Canola plastid 51.04 50.0
CDY11655 Canola plastid 51.04 50.0
CDY49086 Canola cytosol, plastid 53.11 48.81
CDY46426 Canola plastid 51.55 48.54
CDY45196 Canola plastid 53.37 48.24
CDY39318 Canola cytosol, plastid 52.59 48.22
CDY53554 Canola plastid 53.11 47.79
CDX81634 Canola plastid 52.85 47.55
CDY03036 Canola plastid 53.89 47.06
CDY67404 Canola plastid 54.15 46.97
CDY41675 Canola plastid 53.89 46.85
CDY40618 Canola plastid 45.08 44.73
CDY31372 Canola plastid 47.41 44.63
CDY47489 Canola plastid 47.41 44.42
CDX71350 Canola plastid 47.15 44.39
CDY26797 Canola plastid 47.67 44.23
CDX72550 Canola plastid 44.56 43.88
CDX72549 Canola plastid 48.7 43.22
CDY24816 Canola cytosol, plastid 40.93 43.05
CDY40619 Canola plastid 48.45 42.99
CDY41645 Canola plastid 46.37 42.42
CDY47249 Canola cytosol 51.55 42.25
CDY24815 Canola plastid 46.11 42.18
CDY04026 Canola cytosol 51.3 41.77
CDX75515 Canola plastid 45.6 41.22
CDY49042 Canola cytosol 51.3 40.99
CDY59664 Canola cytosol 50.78 40.92
CDX69153 Canola plastid 45.34 40.7
CDY37534 Canola nucleus 51.3 40.57
CDX78606 Canola nucleus 52.85 40.48
CDY28689 Canola nucleus 51.04 40.45
CDX70589 Canola nucleus 52.59 40.28
CDX87609 Canola cytosol 44.82 38.53
CDX88265 Canola cytosol 44.3 38.34
CDX85943 Canola plastid 43.26 38.04
CDX68102 Canola plastid 43.52 37.92
CDY00122 Canola cytosol 51.55 27.07
CDY65043 Canola cytosol 52.33 12.78
Protein Annotations
Gene3D:1.10.510.10MapMan:18.4.1.37.1MapMan:26.8.1.1.3Gene3D:3.30.200.20GO:A0A078G1N8UniProt:A0A078G1N8
EnsemblPlants:CDY20465ProteinID:CDY20465ProteinID:CDY20465.1GO:GO:0000166GO:GO:0003674GO:GO:0003824
GO:GO:0004672GO:GO:0004674GO:GO:0005488GO:GO:0005524GO:GO:0006464GO:GO:0006468
GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016301GO:GO:0016740GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00012553001InterPro:IPR000719InterPro:Kinase-like_dom_sfPFAM:PF07714PIRSF:PIRSF000654ScanProsite:PS00107
ScanProsite:PS00108PFscan:PS50011PANTHER:PTHR27001PANTHER:PTHR27001:SF124InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BS
SMART:SM00220SUPFAM:SSF56112InterPro:Ser-Thr/Tyr_kinase_cat_domInterPro:Ser/Thr_kinase_ASUniParc:UPI0004EBA714:
Description
BnaC04g05790DBnaC04g05790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G1N8]
Coordinates
chrLK032108:+:289824..291529
Molecular Weight (calculated)
42887.4 Da
IEP (calculated)
9.156
GRAVY (calculated)
-0.338
Length
386 amino acids
Sequence
(BLAST)
001: MGSCFSSRVK AENPFNDGKS SVLYGLSMSS GKSTVAAAQK TEGEILESTP VKNFTFNELK LATRNFRPDS VIGEGGFGCV FKGWLDETNL TPTKPGTGLV
101: IAVKKLNREG LQGHREWLTE INYLGRLSHP NLVKLVGYCL EDEHHLLVYE FMPKGSLENH LFRRSTYFKP LPWFLRIKVA LDAAKGIAFL HSDPVKVIYR
201: DIKASNILLD ADYNGKLSDF GLARDGPTGD LSYVSTRIMG TYGYAAPEYM SSGHLNARSD VYSFGVVLLE ILTGKQALDD NRPANEESLV EWARPHFASK
301: RKVLQIVDAR LETQYLPEEA VRLASIAVQC LSLEPKARPT MDQVVRALQQ LQDNLGKPTQ TDPVNKTQGF KTGAKLPEKR STPKPF
Best Arabidopsis Sequence Match ( AT2G39660.1 )
(BLAST)
001: MGSCFSSRVK ADIFHNGKSS DLYGLSLSSR KSSSTVAAAQ KTEGEILSST PVKSFTFNEL KLATRNFRPD SVIGEGGFGC VFKGWLDEST LTPTKPGTGL
101: VIAVKKLNQE GFQGHREWLT EINYLGQLSH PNLVKLIGYC LEDEHRLLVY EFMQKGSLEN HLFRRGAYFK PLPWFLRVNV ALDAAKGLAF LHSDPVKVIY
201: RDIKASNILL DADYNAKLSD FGLARDGPMG DLSYVSTRVM GTYGYAAPEY MSSGHLNARS DVYSFGVLLL EILSGKRALD HNRPAKEENL VDWARPYLTS
301: KRKVLLIVDN RLDTQYLPEE AVRMASVAVQ CLSFEPKSRP TMDQVVRALQ QLQDNLGKPS QTNPVKDTKK LGFKTGTTKS SEKRFTQKPF GRHLV
Arabidopsis Description
BIK1BIK1 [Source:UniProtKB/TrEMBL;Acc:A0A178VYW0]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.