CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY06478

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39660.1	CDY06478	AT4G14640.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005027.1-P	Field mustard	cytosol	100.0	100.0
CDY20465	Canola	cytosol	98.17	97.15
CDY07643	Canola	plastid	89.79	87.28
CDY24954	Canola	plastid	89.79	87.28
CDY07022	Canola	plastid	83.51	83.73
AT2G39660.1	Thale cress	plastid	86.39	83.54
CDX93249	Canola	plastid	82.98	82.77
CDY02940	Canola	cytosol	67.02	73.14
CDX76093	Canola	cytosol, plastid	66.75	72.86
CDY40221	Canola	plastid	71.2	70.83
CDY40347	Canola	plastid	57.85	56.67
CDY06715	Canola	plastid	60.21	56.37
CDX95143	Canola	plastid	60.21	56.37
CDY55560	Canola	plastid	57.59	56.27
CDY06271	Canola	plastid	59.69	56.16
CDY09904	Canola	plastid	59.42	55.91
CDY39519	Canola	cytosol	57.85	55.81
CDY47885	Canola	plastid	60.21	55.69
CDX80814	Canola	plastid	56.81	55.5
CDY10453	Canola	plastid	56.54	55.38
CDY48100	Canola	plastid	56.02	55.15
CDY04848	Canola	plastid	55.76	54.9
CDY31741	Canola	cytosol, plastid	59.69	54.55
CDX77220	Canola	cytosol, plastid	59.69	54.55
CDX95754	Canola	plastid	57.59	54.46
CDX83305	Canola	plastid	57.33	54.21
CDY38760	Canola	plastid	51.83	50.25
CDY11655	Canola	plastid	51.83	50.25
CDY52768	Canola	plastid	51.83	49.75
CDY49086	Canola	cytosol, plastid	53.93	49.05
CDY46426	Canola	plastid	52.09	48.54
CDY39318	Canola	cytosol, plastid	53.4	48.46
CDY45196	Canola	plastid	53.93	48.24
CDY53554	Canola	plastid	53.4	47.55
CDX81634	Canola	plastid	53.14	47.32
CDY03036	Canola	plastid	54.19	46.83
CDY67404	Canola	plastid	54.45	46.74
CDY41675	Canola	plastid	54.19	46.62
CDY40618	Canola	plastid	45.55	44.73
CDY31372	Canola	plastid	47.91	44.63
CDY47489	Canola	plastid	47.91	44.42
CDX71350	Canola	plastid	47.64	44.39
CDY26797	Canola	plastid	48.17	44.23
CDX72550	Canola	plastid	45.03	43.88
CDX72549	Canola	plastid	49.21	43.22
CDY24816	Canola	cytosol, plastid	41.36	43.05
CDY40619	Canola	plastid	48.95	42.99
CDY41645	Canola	plastid	46.86	42.42
CDY24815	Canola	plastid	46.6	42.18
CDY47249	Canola	cytosol	51.57	41.83
CDY04026	Canola	cytosol	51.31	41.35
CDX75515	Canola	plastid	46.07	41.22
CDX69153	Canola	plastid	45.81	40.7
CDY49042	Canola	cytosol	51.31	40.58
CDY59664	Canola	cytosol	50.79	40.5
CDY37534	Canola	nucleus	51.31	40.16
CDX78606	Canola	nucleus	52.88	40.08
CDY28689	Canola	nucleus	51.05	40.04
CDX70589	Canola	nucleus	52.62	39.88
CDX87609	Canola	cytosol	45.29	38.53
CDX88265	Canola	cytosol	44.76	38.34
CDX85943	Canola	plastid	43.72	38.04
CDX68102	Canola	plastid	43.98	37.92
CDY00122	Canola	cytosol	51.57	26.8
CDY65043	Canola	cytosol	52.36	12.65

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.37.1	MapMan:26.8.1.1.3	Gene3D:3.30.200.20	GO:A0A078CDA9	EnsemblPlants:CDX74847
ProteinID:CDX74847	ProteinID:CDX74847.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00116830001
InterPro:IPR000719	InterPro:Kinase-like_dom_sf	PFAM:PF07714	PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108
PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF124	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220
SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	UniParc:UPI00025473EC	:	:

Description

BnaA05g05930D

Coordinates

chrLK031802:-:954977..957065

Molecular Weight (calculated)

42618.2 Da

IEP (calculated)

9.311

GRAVY (calculated)

-0.336

Length

382 amino acids

Sequence
(BLAST)

001: MGSCFSSRVK AENPFNDGKS SVLYGLSMSS RKSTVAAAQK TEGEILESTP VKNFTFNELK LATRNFRPDS VIGEGGFGCV FKGWLDETSL TPTKPGTGLV
101: IAVKKLNREG LQGHREWLTE INYLGQLSHP NLVKLIGYCL EDEHHLLVYE FMPKGSLENH LFRRSTYFKP LPWFLRIKVA LDAAKGIAFL HSDPVKVIYR
201: DIKASNILLD ADYNGKLSDF GLARDGPTGD LSYVSTRIMG TYGYAAPEYM SSGHLNARSD VYSFGVVLLE ILTGKQALDD NRPANEESLV EWARPHFASK
301: RKVLQIVDAR LETQYLPEEA VRLASIAVQC LSLEPKARPT MDQVVRALQQ LQDNLGKLTQ TDPVNKTQRF KTGAKLPEKR SK

Best Arabidopsis Sequence Match ( AT2G39660.1 )
(BLAST)

001: MGSCFSSRVK ADIFHNGKSS DLYGLSLSSR KSSSTVAAAQ KTEGEILSST PVKSFTFNEL KLATRNFRPD SVIGEGGFGC VFKGWLDEST LTPTKPGTGL
101: VIAVKKLNQE GFQGHREWLT EINYLGQLSH PNLVKLIGYC LEDEHRLLVY EFMQKGSLEN HLFRRGAYFK PLPWFLRVNV ALDAAKGLAF LHSDPVKVIY
201: RDIKASNILL DADYNAKLSD FGLARDGPMG DLSYVSTRVM GTYGYAAPEY MSSGHLNARS DVYSFGVLLL EILSGKRALD HNRPAKEENL VDWARPYLTS
301: KRKVLLIVDN RLDTQYLPEE AVRMASVAVQ CLSFEPKSRP TMDQVVRALQ QLQDNLGKPS QTNPVKDTKK LGFKTGTTKS SEKRFTQKPF GRHLV

Arabidopsis Description

BIK1BIK1 [Source:UniProtKB/TrEMBL;Acc:A0A178VYW0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.