CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY06478

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39660.1	CDY06478	AT4G14640.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017061.1-P	Field mustard	cytosol	92.13	99.15
CDX93249	Canola	plastid	98.95	98.43
CDY24954	Canola	plastid	86.88	84.22
CDY07643	Canola	plastid	86.88	84.22
CDX74847	Canola	cytosol	83.73	83.51
CDY20465	Canola	cytosol	83.73	82.64
AT2G39660.1	Thale cress	plastid	85.04	82.03
CDY02940	Canola	cytosol	68.24	74.29
CDX76093	Canola	cytosol, plastid	68.24	74.29
CDY40221	Canola	plastid	72.7	72.14
CDY40347	Canola	plastid	60.63	59.23
CDY10453	Canola	plastid	59.58	58.21
CDY55560	Canola	plastid	59.32	57.8
CDY48100	Canola	plastid	58.53	57.47
CDX80814	Canola	plastid	58.53	57.03
CDY04848	Canola	plastid	58.01	56.96
CDY06715	Canola	plastid	59.84	55.88
CDX95143	Canola	plastid	59.84	55.88
CDY06271	Canola	plastid	59.32	55.66
CDY09904	Canola	plastid	58.79	55.17
CDY39519	Canola	cytosol	56.96	54.8
CDY47885	Canola	plastid	58.79	54.24
CDY31741	Canola	cytosol, plastid	59.06	53.83
CDX77220	Canola	cytosol, plastid	59.06	53.83
CDX95754	Canola	plastid	56.96	53.71
CDX83305	Canola	plastid	56.69	53.47
CDY38760	Canola	plastid	50.66	48.98
CDY11655	Canola	plastid	50.66	48.98
CDY52768	Canola	plastid	50.66	48.49
CDY45196	Canola	plastid	54.07	48.24
CDY49086	Canola	cytosol, plastid	53.02	48.1
CDY53554	Canola	plastid	53.81	47.79
CDX81634	Canola	plastid	53.54	47.55
CDY39318	Canola	cytosol, plastid	52.49	47.51
CDY46426	Canola	plastid	50.92	47.32
CDY03036	Canola	plastid	54.33	46.83
CDY67404	Canola	plastid	54.59	46.74
CDY41675	Canola	plastid	54.33	46.62
CDY31372	Canola	plastid	48.56	45.12
CDY47489	Canola	plastid	48.56	44.9
CDX71350	Canola	plastid	48.29	44.88
CDY26797	Canola	plastid	48.56	44.47
CDY40618	Canola	plastid	44.09	43.19
CDY24816	Canola	cytosol, plastid	41.21	42.78
CDX72549	Canola	plastid	48.56	42.53
CDY40619	Canola	plastid	48.29	42.3
CDY41645	Canola	plastid	46.72	42.18
CDY24815	Canola	plastid	46.46	41.94
CDY47249	Canola	cytosol	51.44	41.61
CDX72550	Canola	plastid	42.78	41.58
CDX75515	Canola	plastid	46.46	41.45
CDY49042	Canola	cytosol	52.23	41.2
CDX69153	Canola	plastid	46.46	41.16
CDY04026	Canola	cytosol	50.92	40.93
CDY28689	Canola	nucleus	52.23	40.86
CDY37534	Canola	nucleus	52.23	40.78
CDY59664	Canola	cytosol	51.18	40.71
CDX78606	Canola	nucleus	53.81	40.67
CDX70589	Canola	nucleus	53.54	40.48
CDX87609	Canola	cytosol	46.46	39.42
CDX85943	Canola	plastid	45.14	39.18
CDX68102	Canola	plastid	45.41	39.05
CDX88265	Canola	cytosol	45.67	39.01
CDY00122	Canola	cytosol	50.92	26.39
CDY65043	Canola	cytosol	52.76	12.71

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.37.1	MapMan:26.8.1.1.3	Gene3D:3.30.200.20	GO:A0A078F1S2	EnsemblPlants:CDY07022
ProteinID:CDY07022	ProteinID:CDY07022.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00123336001	InterPro:IPR000719
InterPro:Kinase-like_dom_sf	PFAM:PF07714	PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR27001	PANTHER:PTHR27001:SF276	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom
InterPro:Ser/Thr_kinase_AS	UniParc:UPI0004EF2A03	SEG:seg	:	:	:

Description

BnaA04g22930D

Coordinates

chrLK031974:+:704756..706609

Molecular Weight (calculated)

42650.9 Da

IEP (calculated)

7.341

GRAVY (calculated)

-0.363

Length

381 amino acids

Sequence
(BLAST)

001: MGSCFSSPVK ADNFSYNDKS SYLSGLSMWS RTSSSVRAGA RKTEEEILEL TSVKSFTFNE LKLATRNFRP DSVVGEGGFG SVFKGWLDET SLTPTKPGTG
101: LVIAVKKLNQ EGLQGHHEWL TEINYLGELS HPNLVKLVGY CLEDEHHLLV YEFMQNGSLE NHLFRRGSHF KPLTWSLRVK VALDAAKGLA FLHSDPVKVI
201: YRDFKASNIL LDADYNGKLS DFGLARDGPM GDLSYVSTRV MGTYGYAAPE YMSSGHLNAR SDVYSFGVVL LEILTGKEAL DYNRPAEEED LVEWARPYLT
301: SKRKVLRIVD PRLDTQYLPE EAVRMASIAV LCISFEPKSR PTMDQVVRAL QQLQDNLGKP TQTDPVKDGK KHKTRAKLPE V

Best Arabidopsis Sequence Match ( AT2G39660.1 )
(BLAST)

001: MGSCFSSRVK ADIFHNGKSS DLYGLSLSSR KSSSTVAAAQ KTEGEILSST PVKSFTFNEL KLATRNFRPD SVIGEGGFGC VFKGWLDEST LTPTKPGTGL
101: VIAVKKLNQE GFQGHREWLT EINYLGQLSH PNLVKLIGYC LEDEHRLLVY EFMQKGSLEN HLFRRGAYFK PLPWFLRVNV ALDAAKGLAF LHSDPVKVIY
201: RDIKASNILL DADYNAKLSD FGLARDGPMG DLSYVSTRVM GTYGYAAPEY MSSGHLNARS DVYSFGVLLL EILSGKRALD HNRPAKEENL VDWARPYLTS
301: KRKVLLIVDN RLDTQYLPEE AVRMASVAVQ CLSFEPKSRP TMDQVVRALQ QLQDNLGKPS QTNPVKDTKK LGFKTGTTKS SEKRFTQKPF GRHLV

Arabidopsis Description

BIK1BIK1 [Source:UniProtKB/TrEMBL;Acc:A0A178VYW0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.