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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 5
  • mitochondrion 1
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:plastid
TargetP:plastid
WoLF PSORT:cytosol
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
CDY06478

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G39660.1 CDY06478 AT4G14640.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY07022 Canola plastid 98.43 98.95
CDY24954 Canola plastid 86.16 83.97
CDY07643 Canola plastid 86.16 83.97
CDX74847 Canola cytosol 82.77 82.98
CDY20465 Canola cytosol 83.03 82.38
AT2G39660.1 Thale cress plastid 84.33 81.77
CDX76093 Canola cytosol, plastid 67.62 74.0
CDY02940 Canola cytosol 67.62 74.0
CDY40221 Canola plastid 72.32 72.14
CDY40347 Canola plastid 59.79 58.72
CDY10453 Canola plastid 58.75 57.69
CDY55560 Canola plastid 58.49 57.29
CDY48100 Canola plastid 57.7 56.96
CDX80814 Canola plastid 57.7 56.52
CDY04848 Canola plastid 57.18 56.44
CDX95143 Canola plastid 59.27 55.64
CDY06715 Canola plastid 59.27 55.64
CDY06271 Canola plastid 58.75 55.42
CDY09904 Canola plastid 58.22 54.93
CDY39519 Canola cytosol 56.4 54.55
CDY47885 Canola plastid 58.22 54.0
CDX77220 Canola cytosol, plastid 58.49 53.59
CDY31741 Canola cytosol, plastid 58.49 53.59
CDX95754 Canola plastid 56.4 53.47
CDX83305 Canola plastid 56.14 53.22
CDY52768 Canola plastid 50.65 48.74
CDY38760 Canola plastid 49.87 48.48
CDY11655 Canola plastid 49.87 48.48
CDY46426 Canola plastid 51.17 47.8
CDY45196 Canola plastid 53.26 47.78
CDY49086 Canola cytosol, plastid 52.22 47.62
CDY39318 Canola cytosol, plastid 52.22 47.51
CDY53554 Canola plastid 53.0 47.32
CDX81634 Canola plastid 52.74 47.09
CDY03036 Canola plastid 53.52 46.38
CDY67404 Canola plastid 53.79 46.29
CDY41675 Canola plastid 53.52 46.17
CDY31372 Canola plastid 48.56 45.37
CDY47489 Canola plastid 48.56 45.15
CDX71350 Canola plastid 48.3 45.12
CDY26797 Canola plastid 48.56 44.71
CDY40618 Canola plastid 43.86 43.19
CDY24816 Canola cytosol, plastid 40.99 42.78
CDX72549 Canola plastid 48.3 42.53
CDY40619 Canola plastid 48.04 42.3
CDY41645 Canola plastid 46.48 42.18
CDY24815 Canola plastid 46.21 41.94
CDY47249 Canola cytosol 51.44 41.83
CDY49042 Canola cytosol 52.48 41.61
CDX72550 Canola plastid 42.56 41.58
CDX75515 Canola plastid 46.21 41.45
CDY28689 Canola nucleus 52.48 41.27
CDY37534 Canola nucleus 52.48 41.19
CDX69153 Canola plastid 46.21 41.16
CDY04026 Canola cytosol 50.91 41.14
CDY59664 Canola cytosol 51.44 41.13
CDX78606 Canola nucleus 54.05 41.07
CDX70589 Canola nucleus 53.79 40.87
CDX87609 Canola cytosol 46.21 39.42
CDX85943 Canola plastid 44.91 39.18
CDX68102 Canola plastid 45.17 39.05
CDX88265 Canola cytosol 45.43 39.01
CDY00122 Canola cytosol 50.91 26.53
CDY65043 Canola cytosol 53.0 12.84
Protein Annotations
Gene3D:1.10.510.10MapMan:18.4.1.37.1MapMan:26.8.1.1.3Gene3D:3.30.200.20GO:A0A078DXT0EnsemblPlants:CDX93249
ProteinID:CDX93249ProteinID:CDX93249.1GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0004672
GO:GO:0005488GO:GO:0005524GO:GO:0006464GO:GO:0006468GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0016301GO:GO:0016740GO:GO:0019538EnsemblPlantsGene:GSBRNA2T00155206001InterPro:IPR000719
InterPro:Kinase-like_dom_sfPFAM:PF07714PIRSF:PIRSF000654ScanProsite:PS00107ScanProsite:PS00108PFscan:PS50011
PANTHER:PTHR27001PANTHER:PTHR27001:SF276InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BSSUPFAM:SSF56112InterPro:Ser-Thr/Tyr_kinase_cat_dom
InterPro:Ser/Thr_kinase_ASUniParc:UPI0004EDBD82SEG:seg:::
Description
BnaC04g46470D
Coordinates
chrLK031875:-:566080..567952
Molecular Weight (calculated)
42797.0 Da
IEP (calculated)
7.341
GRAVY (calculated)
-0.366
Length
383 amino acids
Sequence
(BLAST)
001: MGSCFSSPVK ADNFSYNDKS SYLSGLSMWS RTSSSVRAAA RKTEEEILEL TSVKSFTFNE LKLATRNFRP DSVVGEGGFG SVFKGWLDET SLTPTKPGTG
101: LVIAVKKLNQ EGLQGHHEWL TEINYLGELS HPNLVKLVGY CLEDDHHLLV YEFMQNGSLE NHLFRRGSHF KPLTWSLRVK VALDAAKGLA FLHSDPVKVI
201: YRDFKASNIL LDADYNGKLS DFGLARDGPM GDLSYVSTRV MGTYGYAAPE YMSSGHLNSR SDVYSFGVVL LEILTGKEAL DYNRPAEEED LVEWARPYLT
301: SKRKVLRIVD PRLDSQYLPE EAVRMASIAV LCISFEPKSR PTMDQVVRAL QQLQDNLGKP TQTDPVKDGK KHGSKTRAKL PEV
Best Arabidopsis Sequence Match ( AT2G39660.1 )
(BLAST)
001: MGSCFSSRVK ADIFHNGKSS DLYGLSLSSR KSSSTVAAAQ KTEGEILSST PVKSFTFNEL KLATRNFRPD SVIGEGGFGC VFKGWLDEST LTPTKPGTGL
101: VIAVKKLNQE GFQGHREWLT EINYLGQLSH PNLVKLIGYC LEDEHRLLVY EFMQKGSLEN HLFRRGAYFK PLPWFLRVNV ALDAAKGLAF LHSDPVKVIY
201: RDIKASNILL DADYNAKLSD FGLARDGPMG DLSYVSTRVM GTYGYAAPEY MSSGHLNARS DVYSFGVLLL EILSGKRALD HNRPAKEENL VDWARPYLTS
301: KRKVLLIVDN RLDTQYLPEE AVRMASVAVQ CLSFEPKSRP TMDQVVRALQ QLQDNLGKPS QTNPVKDTKK LGFKTGTTKS SEKRFTQKPF GRHLV
Arabidopsis Description
BIK1BIK1 [Source:UniProtKB/TrEMBL;Acc:A0A178VYW0]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.