CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY06478

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39660.1	CDY06478	AT4G14640.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000141.1-P	Field mustard	plastid	99.75	99.75
CDY24954	Canola	plastid	99.49	99.49
CDX74847	Canola	cytosol	87.28	89.79
AT2G39660.1	Thale cress	plastid	89.82	89.37
CDY20465	Canola	cytosol	87.53	89.12
CDY07022	Canola	plastid	84.22	86.88
CDX93249	Canola	plastid	83.97	86.16
CDY02940	Canola	cytosol	67.18	75.43
CDX76093	Canola	cytosol, plastid	67.18	75.43
CDY40221	Canola	plastid	72.77	74.48
CDY40347	Canola	plastid	58.02	58.46
CDY55560	Canola	plastid	57.51	57.8
CDY10453	Canola	plastid	57.25	57.69
CDY06271	Canola	plastid	59.03	57.14
CDY09904	Canola	plastid	59.03	57.14
CDX80814	Canola	plastid	56.74	57.03
CDY48100	Canola	plastid	56.23	56.96
CDX95143	Canola	plastid	59.03	56.86
CDY06715	Canola	plastid	59.03	56.86
CDY04848	Canola	plastid	55.98	56.7
CDY39519	Canola	cytosol	56.74	56.31
CDY47885	Canola	plastid	58.27	55.45
CDY31741	Canola	cytosol, plastid	58.02	54.55
CDX77220	Canola	cytosol, plastid	58.02	54.55
CDX95754	Canola	plastid	55.98	54.46
CDX83305	Canola	plastid	55.73	54.21
CDY38760	Canola	plastid	50.64	50.51
CDY11655	Canola	plastid	50.38	50.25
CDY49086	Canola	cytosol, plastid	53.18	49.76
CDY52768	Canola	plastid	50.38	49.75
CDY45196	Canola	plastid	53.69	49.41
CDY39318	Canola	cytosol, plastid	52.67	49.17
CDY53554	Canola	plastid	53.44	48.95
CDX81634	Canola	plastid	53.18	48.72
CDY03036	Canola	plastid	54.2	48.19
CDY67404	Canola	plastid	54.45	48.09
CDY46426	Canola	plastid	50.13	48.05
CDY41675	Canola	plastid	54.2	47.97
CDY31372	Canola	plastid	47.58	45.61
CDY47489	Canola	plastid	47.58	45.39
CDX71350	Canola	plastid	47.33	45.37
CDY26797	Canola	plastid	47.58	44.95
CDY40618	Canola	plastid	43.0	43.44
CDY24816	Canola	cytosol, plastid	39.95	42.78
CDX72549	Canola	plastid	47.07	42.53
CDX72550	Canola	plastid	42.24	42.35
CDY40619	Canola	plastid	46.82	42.3
CDY47249	Canola	cytosol	50.38	42.04
CDY41645	Canola	plastid	45.04	41.94
CDY24815	Canola	plastid	44.78	41.71
CDY04026	Canola	cytosol	50.13	41.56
CDX75515	Canola	plastid	44.53	40.98
CDY59664	Canola	cytosol	49.87	40.92
CDY49042	Canola	cytosol	50.13	40.79
CDX69153	Canola	plastid	44.53	40.7
CDY28689	Canola	nucleus	50.38	40.66
CDY37534	Canola	nucleus	50.13	40.37
CDX87609	Canola	cytosol	46.06	40.31
CDX78606	Canola	nucleus	51.4	40.08
CDX88265	Canola	cytosol	45.29	39.91
CDX70589	Canola	nucleus	51.15	39.88
CDX85943	Canola	plastid	43.51	38.95
CDX68102	Canola	plastid	43.77	38.83
CDY00122	Canola	cytosol	49.87	26.67
CDY65043	Canola	cytosol	50.89	12.65

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.37.1	MapMan:26.8.1.1.3	Gene3D:3.30.200.20	GO:A0A078F7K3	UniProt:A0A078F7K3
EnsemblPlants:CDY07643	ProteinID:CDY07643	ProteinID:CDY07643.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00124751001	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	PFAM:PF07714	PIRSF:PIRSF000654	ScanProsite:PS00107
ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF124	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS
SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0004EF3053	:

Description

BnaA03g18680DBnaA03g18680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F7K3]

Coordinates

chrLK031980:-:263609..265726

Molecular Weight (calculated)

43828.5 Da

IEP (calculated)

9.527

GRAVY (calculated)

-0.390

Length

393 amino acids

Sequence
(BLAST)

001: MGSCFSSCVK ADNLFHNGKS SDLYGLSISS RKSSSTVAAA QKTEGEILDS TPVKSFTFNE LKLATRNFRP DSVIGEGGFG CVFKGWLDET SLTPTRPGTG
101: LVIAVKKLNQ EGFQGHREWL TEINYLGQLS HPNLVKLVGY CLEDEHHLLV YEFMQKGSLE NHLFRRGTYF KPLPWFLRVK VALDAAKGLA FLHSDPVKVI
201: YRDIKASNIL LDADYNGKLS DFGLARDGPT GDRSYVSTRV MGTYGYAAPE YMSSGHLNAR SDVYSFGVVL LEILTGKQAL DHNRPAKEEK LVEWARPYLT
301: SKRKVLQVVD ARLDTQYLPE EAVRLASIAV QCLSIEPKSR PPMDQVVRAL QQLQDNLGKP TQPDPVKDAK KQGLKTGAKL QETRFKQRPF GKH

Best Arabidopsis Sequence Match ( AT2G39660.1 )
(BLAST)

001: MGSCFSSRVK ADIFHNGKSS DLYGLSLSSR KSSSTVAAAQ KTEGEILSST PVKSFTFNEL KLATRNFRPD SVIGEGGFGC VFKGWLDEST LTPTKPGTGL
101: VIAVKKLNQE GFQGHREWLT EINYLGQLSH PNLVKLIGYC LEDEHRLLVY EFMQKGSLEN HLFRRGAYFK PLPWFLRVNV ALDAAKGLAF LHSDPVKVIY
201: RDIKASNILL DADYNAKLSD FGLARDGPMG DLSYVSTRVM GTYGYAAPEY MSSGHLNARS DVYSFGVLLL EILSGKRALD HNRPAKEENL VDWARPYLTS
301: KRKVLLIVDN RLDTQYLPEE AVRMASVAVQ CLSFEPKSRP TMDQVVRALQ QLQDNLGKPS QTNPVKDTKK LGFKTGTTKS SEKRFTQKPF GRHLV

Arabidopsis Description

BIK1BIK1 [Source:UniProtKB/TrEMBL;Acc:A0A178VYW0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.