Factsheet for PGSC0003DMT400049853

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3
cytosol 1
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g077390.1.1	Tomato	cytosol	69.71	80.19
PGSC0003DMT400065801	Potato	plastid	48.34	55.48
PGSC0003DMT400002280	Potato	plastid	48.13	55.37
PGSC0003DMT400095910	Potato	cytosol	37.55	55.02
Bra016265.1-P	Field mustard	plastid	44.81	54.82
CDY38760	Canola	plastid	44.81	54.82
CDY11655	Canola	plastid	44.61	54.57
AT1G69790.1	Thale cress	plastid	43.15	53.75
KRH56930	Soybean	cytosol	44.4	53.5
HORVU4Hr1G075150.2	Barley	plastid	46.06	53.24
Os10t0405100-02	Rice	plasma membrane	47.1	53.04
CDY52768	Canola	plastid	43.78	53.02
TraesCS4A01G016800.1	Wheat	plastid	46.06	52.73
TraesCS4D01G286100.1	Wheat	plastid	46.06	52.73
TraesCS4B01G287300.1	Wheat	plastid	46.06	52.73
GSMUA_Achr1P21600_001	Banana	plastid	45.02	52.54
AT1G26970.1	Thale cress	plastid	44.61	52.18
Bra016301.1-P	Field mustard	plastid	43.98	51.71
CDY46426	Canola	plastid	43.98	51.71
EER92783	Sorghum	plastid	46.89	51.48
PGSC0003DMT400011261	Potato	plastid	42.32	50.87
GSMUA_Achr2P07470_001	Banana	plastid	43.57	50.48
PGSC0003DMT400071329	Potato	plastid	41.08	50.25
Zm00001d033004_P004	Maize	plastid	45.44	50.23
EER94269	Sorghum	plastid	45.02	50.12
Zm00001d048314_P001	Maize	cytosol, plastid	46.68	49.34
PGSC0003DMT400003582	Potato	cytosol	36.1	49.01
GSMUA_Achr6P10640_001	Banana	plastid	40.46	48.27
PGSC0003DMT400082362	Potato	plastid	38.8	47.22
PGSC0003DMT400028591	Potato	plastid	39.83	46.49
PGSC0003DMT400023009	Potato	cytosol, plastid	40.04	46.39
PGSC0003DMT400045075	Potato	plastid	37.76	43.86
PGSC0003DMT400048049	Potato	plastid	36.93	43.0
PGSC0003DMT400038068	Potato	plastid	36.72	42.34
PGSC0003DMT400025864	Potato	plastid	36.51	42.21
PGSC0003DMT400045429	Potato	cytosol	39.42	39.83
GSMUA_Achr10P...	Banana	cytosol	46.06	39.02
PGSC0003DMT400002229	Potato	cytosol	38.38	38.38
PGSC0003DMT400079361	Potato	cytosol	37.97	38.2

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.37.1	Gene3D:3.30.200.20	Gene3D:4.10.60.10	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524
GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M1BPF2
PFAM:PF07714	EnsemblPlantsGene:PGSC0003DMG400019370	PGSC:PGSC0003DMG400019370	EnsemblPlants:PGSC0003DMT400049853	PIRSF:PIRSF000654	ScanProsite:PS00107
ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF160	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS
SUPFAM:SSF56112	SUPFAM:SSF57756	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	UniParc:UPI000294A88D	InterPro:Znf_CCHC_sf

Description

Protein kinase APK1A, chloroplast [Source:PGSC_GENE;Acc:PGSC0003DMG400019370]

Coordinates

chr12:-:18237394..18242515

Molecular Weight (calculated)

53738.5 Da

IEP (calculated)

9.813

GRAVY (calculated)

-0.161

Length

482 amino acids

Sequence
(BLAST)

001: EILSSPYLRA LLLSELAKAT TNFHSDCLLG EGGFGYVYKG WLCNHTLTAA TPGSGLGVAV KKLKPRGLQG HKEWLSEVNY LGQLRHPNLV KLIGFCLEGE
101: NRLLVYEFMP RGSLENHLFP KSAPVLPWAT RIKVAIAAAR GLSFLHDAEP QVIYRDFKAS NILLDSEFNA KLSDFGLAKS GPTGDHSHVS TQVMGTQGYT
201: APEYLATGKL TAKCDVYSFG VVLLELLTGR RVMDKRKAGA EQNLIEWATP YLHDKKKLFR IMDTKLEGQY PRKAATIAAT LALHCVHPES RGRPDMSFVL
301: SALEQLPSKY MSGRPFGDRK KMSKSRHKSE SAFPGSVRTK HTSRISEGLK EVLGERQRTR MVQFLMKLLP EFESIHGSLL NREVTSALDV ELAVVLREET
401: RVGTQAAMES MSLLVVALLA QKSTIDTSSR TTKRSVQCYE CNDFDHIAVN CLKKKKFCAY CKITGHHIFR IIVIVLIVHQ AY

Best Arabidopsis Sequence Match ( AT1G14370.1 )
(BLAST)

001: MGNCLDSSAK VDNSNHSPHA NSASSGSKVS SKTSRSTGPS GLSTTSYSTD SSFGPLPTLR TEGEILSSPN LKAFTFNELK NATKNFRQDN LLGEGGFGCV
101: FKGWIDQTSL TASRPGSGIV VAVKQLKPEG FQGHKEWLTE VNYLGQLSHP NLVLLVGYCA EGENRLLVYE FMPKGSLENH LFRRGAQPLT WAIRMKVAVG
201: AAKGLTFLHE AKSQVIYRDF KAANILLDAD FNAKLSDFGL AKAGPTGDNT HVSTKVIGTH GYAAPEYVAT GRLTAKSDVY SFGVVLLELI SGRRAMDNSN
301: GGNEYSLVDW ATPYLGDKRK LFRIMDTKLG GQYPQKGAFT AANLALQCLN PDAKLRPKMS EVLVTLEQLE SVAKPGTKHT QMESPRFHHS SVMQKSPVRY
401: SHDRPLLHMT PGASPLPSYT QSPRVR

Arabidopsis Description

PBL2PBL2 [Source:UniProtKB/TrEMBL;Acc:A0A178WI52]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.