Factsheet for PGSC0003DMT400039871

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 2
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400014123
PGSC0003DMT400018569
PGSC0003DMT400046278
PGSC0003DMT400054299
PGSC0003DMT400058435
PGSC0003DMT400070437
PGSC0003DMT400097662

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G31950.1	PGSC0003DMT400014123	AT2G41100.1	17360592
AT4G31950.1	PGSC0003DMT400018569	AT2G41100.1	17360592
AT4G31950.1	PGSC0003DMT400046278	AT2G41100.1	17360592
AT4G31950.1	PGSC0003DMT400054299	AT2G41100.1	17360592
AT4G31950.1	PGSC0003DMT400058435	AT2G41100.1	17360592
AT4G31950.1	PGSC0003DMT400070437	AT2G41100.1	17360592
AT4G31950.1	PGSC0003DMT400097662	AT2G41100.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g088970.1.1	Tomato	endoplasmic reticulum	97.0	85.77
KRH61225	Soybean	nucleus	75.11	66.54
VIT_18s0001g11400.t01	Wine grape	endoplasmic reticulum, golgi	74.03	65.46
CDY53704	Canola	endoplasmic reticulum, extracellular	67.38	60.04
CDY23316	Canola	extracellular, golgi	67.17	59.85
Bra010214.1-P	Field mustard	extracellular, golgi	67.38	59.81
AT4G31940.1	Thale cress	endoplasmic reticulum, extracellular, golgi	64.38	57.25
AT4G31970.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	63.09	56.21
AT4G31950.1	Thale cress	endoplasmic reticulum, extracellular, golgi	59.44	54.1
PGSC0003DMT400004789	Potato	cytosol	23.61	53.14
PGSC0003DMT400082322	Potato	cytosol	11.16	47.71
PGSC0003DMT400008622	Potato	endoplasmic reticulum, golgi	48.71	45.95
PGSC0003DMT400008624	Potato	extracellular, golgi	49.57	45.21
PGSC0003DMT400008634	Potato	endoplasmic reticulum, extracellular	50.43	45.11
PGSC0003DMT400056767	Potato	endoplasmic reticulum	50.43	45.11
PGSC0003DMT400008625	Potato	endoplasmic reticulum, golgi	50.0	45.07
PGSC0003DMT400008635	Potato	endoplasmic reticulum, extracellular	48.71	44.42
PGSC0003DMT400038700	Potato	mitochondrion	48.28	44.03
PGSC0003DMT400004790	Potato	endoplasmic reticulum, golgi	48.28	43.44
PGSC0003DMT400072524	Potato	endoplasmic reticulum, extracellular	48.71	43.32
KRH51926	Soybean	endoplasmic reticulum	32.4	43.14
PGSC0003DMT400051969	Potato	endoplasmic reticulum, extracellular	47.64	42.69
PGSC0003DMT400011829	Potato	endoplasmic reticulum, extracellular	45.06	39.62
PGSC0003DMT400069148	Potato	endoplasmic reticulum, golgi	45.71	39.08
PGSC0003DMT400075815	Potato	endoplasmic reticulum, extracellular	43.78	38.71
PGSC0003DMT400085819	Potato	cytosol	10.73	33.33

Protein Annotations

Gene3D:1.10.630.10	MapMan:50.1.13	InterPro:Cyt_P450	InterPro:Cyt_P450_CS	InterPro:Cyt_P450_E_grp-I	InterPro:Cyt_P450_sf
GO:GO:0003674	GO:GO:0003824	GO:GO:0004497	GO:GO:0005488	GO:GO:0005506	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0016705	GO:GO:0020037	GO:GO:0046872	GO:GO:0055114
InterPro:IPR036396	UniProt:M1B8W8	PFAM:PF00067	EnsemblPlantsGene:PGSC0003DMG400015421	PGSC:PGSC0003DMG400015421	EnsemblPlants:PGSC0003DMT400039871
PRINTS:PR00385	PRINTS:PR00463	ScanProsite:PS00086	PANTHER:PTHR24298	PANTHER:PTHR24298:SF111	SUPFAM:SSF48264
UniParc:UPI0002949602	:	:	:	:	:

Description

CYP82C4 [Source:PGSC_GENE;Acc:PGSC0003DMG400015421]

Coordinates

chr12:+:56750077..56752555

Molecular Weight (calculated)

52566.4 Da

IEP (calculated)

6.413

GRAVY (calculated)

-0.155

Length

466 amino acids

Sequence
(BLAST)

001: MADNYGPAFN LRLGTRRAFV VSSWEMAKEC FTLNDKALAS RPTTVAAKHM GYGYAVFGFA PYSPFWREMR KIAMFELLSN RRLDALKYVQ VSEVDIGIQE
101: LYKLWVDNNS DRPILVELKR WFEDLTLNVI VRMVAGKRYF GAGATCDNDD EARRCQKAIN QFFHLIGIFV PSDAFPILGW FDINGHEKAM KKTAKELDFI
201: LEGWLKEHRE KRKCTSIEVK STTDSAVQDF IDVMLSLEEE GRLSNFPYDA DTSIKSTCLA LILGGSDTTA GTLTWAISLL LNNPKILTKA QEEIDLHVGK
301: NRQIDESDIN NLIYIQAIIK ETLRLYPAGP LLGPREAMDN CEISGYKITP GTRLIVNVWK IQRDPRIWED PDCFNPDRFL MSNVDVKGKD FELIPFGSGR
401: RSCPGASLAL QVLHLTLARI LHAFEFTKPI DGQPIDLTES PGLTIPKATP LDVLIAPRLS ANLYGC

Best Arabidopsis Sequence Match ( AT4G31940.1 )
(BLAST)

001: MDTSLFSLFV PILVFVFIAL FKKSKKPKYV KAPAPSGAWP IIGHLHLLGG KEQLLYRTLG KMADHYGPAM SLQLGSNEAF VVSSFEVAKD CFTVNDKALA
101: SRPMTAAAKH MGYNFAVFGF APYSAFWREM RKIATIELLS NRRLQMLKHV RVSEITMGVK DLYSLWFKNG GTKPVMVDLK SWLEDMTLNM IVRMVAGKRY
201: FGGGGSVSSE DTEEAMQCKK AIAKFFHLIG IFTVSDAFPT LSFFDLQGHE KEMKQTGSEL DVILERWIEN HRQQRKFSGT KENDSDFIDV MMSLAEQGKL
301: SHLQYDANTS IKSTCLALIL GGSDTSASTL TWAISLLLNN KEMLKKAQDE IDIHVGRDRN VEDSDIENLV YLQAIIKETL RLYPAGPLLG PREAMEDCTV
401: AGYYVPCGTR LIVNVWKIQR DPKVYMEPNE FRPERFITGE AKEFDVRGQN FELMPFGSGR RSCPGSSLAM QVLHLGLARF LHSFDVKTVM DMPVDMSENP
501: GLTIPKATPL EVLISPRIKE ELFV

Arabidopsis Description

CYP82C4Cytochrome P450 82C4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ46]
SUBAcon: [endoplasmic reticulum,golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.