Factsheet for PGSC0003DMT400085819

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
endoplasmic reticulum 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g039210.2.1	Tomato	extracellular, golgi	94.0	27.06
PGSC0003DMT400072524	Potato	endoplasmic reticulum, extracellular	56.0	16.03
PGSC0003DMT400051969	Potato	endoplasmic reticulum, extracellular	44.67	12.88
VIT_12s0035g00560.t01	Wine grape	endoplasmic reticulum, extracellular	38.0	11.92
PGSC0003DMT400011829	Potato	endoplasmic reticulum, extracellular	42.0	11.89
VIT_12s0035g00610.t01	Wine grape	extracellular, golgi	40.0	11.56
VIT_00s1216g00010.t01	Wine grape	mitochondrion	11.33	11.49
PGSC0003DMT400069148	Potato	endoplasmic reticulum, golgi	41.33	11.38
VIT_00s1216g00020.t01	Wine grape	endoplasmic reticulum, extracellular	37.33	10.81
PGSC0003DMT400039871	Potato	cytosol	33.33	10.73
VIT_09s0002g09250.t01	Wine grape	endoplasmic reticulum, golgi	35.33	10.23
VIT_09s0002g09200.t01	Wine grape	extracellular, golgi	34.67	10.04
KRH07450	Soybean	endoplasmic reticulum, extracellular	34.67	9.98
PGSC0003DMT400075815	Potato	endoplasmic reticulum, extracellular	34.0	9.68
PGSC0003DMT400004790	Potato	endoplasmic reticulum, golgi	33.33	9.65
PGSC0003DMT400008624	Potato	extracellular, golgi	32.67	9.59
PGSC0003DMT400038700	Potato	mitochondrion	32.67	9.59
PGSC0003DMT400008625	Potato	endoplasmic reticulum, golgi	32.67	9.48
PGSC0003DMT400008622	Potato	endoplasmic reticulum, golgi	30.67	9.31
PGSC0003DMT400008634	Potato	endoplasmic reticulum, extracellular	30.0	8.64
PGSC0003DMT400056767	Potato	endoplasmic reticulum	28.67	8.25
PGSC0003DMT400008635	Potato	endoplasmic reticulum, extracellular	26.67	7.83
VIT_09s0002g09270.t01	Wine grape	endoplasmic reticulum	24.67	7.81
VIT_04s0044g01610.t01	Wine grape	endoplasmic reticulum, extracellular	36.0	5.25
PGSC0003DMT400082322	Potato	cytosol	0.0	0.0
VIT_00s0189g00110.t01	Wine grape	cytosol	0.0	0.0
PGSC0003DMT400004789	Potato	cytosol	0.0	0.0
VIT_12s0035g00570.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400085819	EnsemblPlantsGene:PGSC0003DMG400035390	Gene3D:1.10.630.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005506	GO:GO:0008150	GO:GO:0008152	GO:GO:0016705	GO:GO:0020037	GO:GO:0055114
InterPro:Cyt_P450	InterPro:Cyt_P450_sf	InterPro:IPR036396	PANTHER:PTHR24298	PANTHER:PTHR24298:SF223	PFAM:PF00067
PGSC:PGSC0003DMG400035390	SUPFAM:SSF48264	UniParc:UPI000294D75B	UniProt:M1DAC4	MapMan:35.1	:

Description

Cytochrome P450 [Source:PGSC_GENE;Acc:PGSC0003DMG400035390]

Coordinates

chr10:+:23397128..23397580

Molecular Weight (calculated)

17535.0 Da

IEP (calculated)

8.959

GRAVY (calculated)

-0.512

Length

150 amino acids

Sequence
(BLAST)

001: MGMYPYLIIN NWEGAKDCLT THDKDFTARP TSMAGQNIGY KYARFTYSNF GPYYNHVRKL ALTQVLSSTK LEEMRHIRVV ELENSIKDLY SLTQVTNKTN
101: EVINITQWFH QLTLNTIVKT ICGKRYNNIE EDEEAKRFRE AFKGTMYVVG

Best Arabidopsis Sequence Match ( AT4G31940.1 )
(BLAST)

001: MDTSLFSLFV PILVFVFIAL FKKSKKPKYV KAPAPSGAWP IIGHLHLLGG KEQLLYRTLG KMADHYGPAM SLQLGSNEAF VVSSFEVAKD CFTVNDKALA
101: SRPMTAAAKH MGYNFAVFGF APYSAFWREM RKIATIELLS NRRLQMLKHV RVSEITMGVK DLYSLWFKNG GTKPVMVDLK SWLEDMTLNM IVRMVAGKRY
201: FGGGGSVSSE DTEEAMQCKK AIAKFFHLIG IFTVSDAFPT LSFFDLQGHE KEMKQTGSEL DVILERWIEN HRQQRKFSGT KENDSDFIDV MMSLAEQGKL
301: SHLQYDANTS IKSTCLALIL GGSDTSASTL TWAISLLLNN KEMLKKAQDE IDIHVGRDRN VEDSDIENLV YLQAIIKETL RLYPAGPLLG PREAMEDCTV
401: AGYYVPCGTR LIVNVWKIQR DPKVYMEPNE FRPERFITGE AKEFDVRGQN FELMPFGSGR RSCPGSSLAM QVLHLGLARF LHSFDVKTVM DMPVDMSENP
501: GLTIPKATPL EVLISPRIKE ELFV

Arabidopsis Description

CYP82C4Cytochrome P450 82C4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ46]
SUBAcon: [endoplasmic reticulum,golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.