Factsheet for Solyc12g088970.1.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 2
plastid 1
extracellular 4
endoplasmic reticulum 7
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G31950.1	Solyc01g008950.2.1	AT2G41100.1	17360592
AT4G31950.1	Solyc10g077010.1.1	AT2G41100.1	17360592
AT4G31950.1	Solyc10g081170.1.1	AT2G41100.1	17360592
AT4G31950.1	Solyc11g072240.1.1	AT2G41100.1	17360592
AT4G31950.1	Solyc12g099990.1.1	AT2G41100.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039871	Potato	cytosol	85.77	97.0
KRH61225	Soybean	nucleus	72.87	73.0
VIT_18s0001g11400.t01	Wine grape	endoplasmic reticulum, golgi	72.11	72.11
CDY53704	Canola	endoplasmic reticulum, extracellular	64.9	65.39
Bra010214.1-P	Field mustard	extracellular, golgi	64.71	64.95
CDY23316	Canola	extracellular, golgi	64.33	64.82
AT4G31940.1	Thale cress	endoplasmic reticulum, extracellular, golgi	62.62	62.98
AT4G31970.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	60.91	61.38
AT4G31950.1	Thale cress	endoplasmic reticulum, extracellular, golgi	58.25	59.96
Solyc04g079680.2.1	Tomato	plastid	49.72	50.38
Solyc04g079640.2.1	Tomato	plastid	48.2	48.94
Solyc04g079660.2.1	Tomato	endoplasmic reticulum, extracellular	48.2	48.94
Solyc09g059240.2.1	Tomato	endoplasmic reticulum, extracellular	45.73	46.53
KRH51926	Soybean	endoplasmic reticulum	30.55	46.0
Solyc10g081550.1.1	Tomato	nucleus	44.97	45.23
Solyc06g073570.2.1	Tomato	extracellular, golgi	44.4	43.09
Solyc10g039210.2.1	Tomato	extracellular, golgi	42.31	42.8
Solyc04g007940.2.1	Tomato	endoplasmic reticulum, extracellular	41.56	41.32

Protein Annotations

Gene3D:1.10.630.10	MapMan:50.1.13	ncoils:Coil	InterPro:Cyt_P450	InterPro:Cyt_P450_CS	InterPro:Cyt_P450_E_grp-I
InterPro:Cyt_P450_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0004497	GO:GO:0005488	GO:GO:0005506
GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0016705	GO:GO:0016709	GO:GO:0019748	GO:GO:0020037	GO:GO:0044550
GO:GO:0046872	GO:GO:0055114	InterPro:IPR036396	UniProt:K4DGW8	PFAM:PF00067	PRINTS:PR00385
PRINTS:PR00463	ScanProsite:PS00086	PANTHER:PTHR24298	PANTHER:PTHR24298:SF111	SUPFAM:SSF48264	EnsemblPlantsGene:Solyc12g088970.1
EnsemblPlants:Solyc12g088970.1.1	TMHMM:TMhelix	UniParc:UPI00027695C2	:	:	:

Description

No Description!

Coordinates

chr12:+:64145347..64147586

Molecular Weight (calculated)

59200.6 Da

IEP (calculated)

7.681

GRAVY (calculated)

-0.133

Length

527 amino acids

Sequence
(BLAST)

001: MDTSSYIPLI GVLIFLYFIF KKNKNCSTSK QAPEPAGAWP IIGHLPLLGG TDQLLYRTLG AMADNYGPAF NLRLGTRRAF VVSSWEMAKE CFTLNDKALA
101: SRPTTVAAKH MGYGYAVFGF APYSPFWREM RKIAMFELLS NRRLDTLKYV QVSEVDMGIQ ALYKLWVDNN SDRPILVELK RWFEDLTLNV IVRMVAGKRY
201: FGAGATCDND DEARRCQKAI NQFFHLIGIF VPSDAFPILG FLDINGHEKA MKKTAKELDF ILEGWLKEHR EKRKCTSIEA KSTTDSAVQD FIDVMLSLEE
301: EGRLSNFPYD ADTSIKSTCL ALILGGSDTT AGTLTWAISL LLNNPKILRK AQEEIDNHIG KNRQIDESDI NNLIYIQAII KETLRLYPAG PLLGPREAMD
401: NCEISGYKIT PGTRLIVNVW KIQRDPRIWE NPNCFNPDRF LTSNVDVKGK DFELIPFGSG RRSCPGASLA LQVLHLTLAR ILHAFEFTKP IDDQPIDLTE
501: SPGLTIPKAT PLDVLVAPRL SANLYGC

Best Arabidopsis Sequence Match ( AT4G31940.1 )
(BLAST)

001: MDTSLFSLFV PILVFVFIAL FKKSKKPKYV KAPAPSGAWP IIGHLHLLGG KEQLLYRTLG KMADHYGPAM SLQLGSNEAF VVSSFEVAKD CFTVNDKALA
101: SRPMTAAAKH MGYNFAVFGF APYSAFWREM RKIATIELLS NRRLQMLKHV RVSEITMGVK DLYSLWFKNG GTKPVMVDLK SWLEDMTLNM IVRMVAGKRY
201: FGGGGSVSSE DTEEAMQCKK AIAKFFHLIG IFTVSDAFPT LSFFDLQGHE KEMKQTGSEL DVILERWIEN HRQQRKFSGT KENDSDFIDV MMSLAEQGKL
301: SHLQYDANTS IKSTCLALIL GGSDTSASTL TWAISLLLNN KEMLKKAQDE IDIHVGRDRN VEDSDIENLV YLQAIIKETL RLYPAGPLLG PREAMEDCTV
401: AGYYVPCGTR LIVNVWKIQR DPKVYMEPNE FRPERFITGE AKEFDVRGQN FELMPFGSGR RSCPGSSLAM QVLHLGLARF LHSFDVKTVM DMPVDMSENP
501: GLTIPKATPL EVLISPRIKE ELFV

Arabidopsis Description

CYP82C4Cytochrome P450 82C4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ46]
SUBAcon: [endoplasmic reticulum,golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.