Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g071190.1.1 | Tomato | plastid | 55.19 | 88.08 |
| PGSC0003DMT400005677 | Potato | nucleus | 64.32 | 65.4 |
| KRH62075 | Soybean | nucleus, plastid | 52.7 | 58.8 |
| VIT_04s0008g03300.t01 | Wine grape | cytosol | 55.6 | 57.51 |
| KRH52755 | Soybean | nucleus, plastid | 54.77 | 57.39 |
| GSMUA_Achr10P... | Banana | nucleus | 46.06 | 47.03 |
| TraesCS7A01G355600.1 | Wheat | cytosol | 45.64 | 41.51 |
| Zm00001d046289_P001 | Maize | cytosol | 43.15 | 41.27 |
| TraesCS7B01G272100.1 | Wheat | cytosol | 43.98 | 40.77 |
| TraesCS7D01G367300.1 | Wheat | cytosol | 44.81 | 40.15 |
| EER88508 | Sorghum | cytosol, mitochondrion, nucleus | 44.4 | 39.63 |
| Os06t0554100-00 | Rice | cytosol | 41.91 | 38.4 |
| HORVU7Hr1G088780.1 | Barley | cytosol | 43.15 | 38.24 |
| AT5G11620.1 | Thale cress | cytosol | 43.15 | 38.1 |
| CDX97127 | Canola | nucleus | 42.32 | 36.82 |
| Bra008950.1-P | Field mustard | nucleus | 42.32 | 36.82 |
| CDY68837 | Canola | nucleus | 41.91 | 36.46 |
| CDX91202 | Canola | mitochondrion, plasma membrane, plastid | 19.92 | 26.52 |
Protein Annotations
| EntrezGene:102585200 | Gene3D:3.30.40.10 | MapMan:35.2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008270 |
| InterPro:IPR001841 | InterPro:IPR007527 | InterPro:IPR013083 | UniProt:M1BLD4 | PFAM:PF04434 | PFAM:PF13639 |
| EnsemblPlantsGene:PGSC0003DMG400018561 | PGSC:PGSC0003DMG400018561 | EnsemblPlants:PGSC0003DMT400047744 | PFscan:PS50966 | PANTHER:PTHR21540 | PANTHER:PTHR21540:SF1 |
| SUPFAM:SSF57850 | UniParc:UPI0002963F02 | RefSeq:XP_015158975.1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SWIM |
| SEG:seg | : | : | : | : | : |
Description
PHD family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400018561]
Coordinates
chr11:+:42514307..42516075
Molecular Weight (calculated)
28013.8 Da
IEP (calculated)
8.780
GRAVY (calculated)
-0.462
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MESLPSSSSN HHHHHHRHRR LTPTQPLADR IFRALSHHLL LLHCRDATFY VLGATCNVYT VTISTTPSCS CPDRTTPCKH ILFVLIRVLG VSIDDTCLYR
101: RRLRPRHLQR LLNLPISTEA LATSKVREMF HQLFSQQPQR SSPIIIKIEN GTTCPVCLEE MNEEEKIAAC VTCRNRIHEE CLMAWKRSNS RRKSISCVLC
201: RARWRDVRNE LEGDKYLNLS SYIISNVENE IGENHQHRCR D
101: RRLRPRHLQR LLNLPISTEA LATSKVREMF HQLFSQQPQR SSPIIIKIEN GTTCPVCLEE MNEEEKIAAC VTCRNRIHEE CLMAWKRSNS RRKSISCVLC
201: RARWRDVRNE LEGDKYLNLS SYIISNVENE IGENHQHRCR D
001: MESVGSNQIS PYVSNRDQRH FLAQPVADRI LRALRHRIRL LHRPNAGTFH VLGATCNVYT VTLMATPTCT CPDRKKPCKH ILFVLIRVLG IPLDDKCLRQ
101: RRLRTCLLFH LFSAPTRPDC LASFRLQQRF LQLFPATTSQ PGYTTNSSSS TSKMENEVDE EPATCPICLD DIIAIENVDG GNGGGKEKET AVVKCRVCKN
201: KVHDECMLAW RKSRGRRPAI CVVCRARWPA NRSSKNPNVG DNNENCHGNC YLNLAPYVDE EVEDGVGTSQ RPC
101: RRLRTCLLFH LFSAPTRPDC LASFRLQQRF LQLFPATTSQ PGYTTNSSSS TSKMENEVDE EPATCPICLD DIIAIENVDG GNGGGKEKET AVVKCRVCKN
201: KVHDECMLAW RKSRGRRPAI CVVCRARWPA NRSSKNPNVG DNNENCHGNC YLNLAPYVDE EVEDGVGTSQ RPC
Arabidopsis Description
PHD family protein [Source:UniProtKB/TrEMBL;Acc:Q9LYG8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.