Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g066550.2.1 | Tomato | nucleus, plastid | 93.67 | 92.89 |
| PGSC0003DMT400047744 | Potato | nucleus | 65.4 | 64.32 |
| KRH52755 | Soybean | nucleus, plastid | 59.49 | 61.3 |
| KRH62075 | Soybean | nucleus, plastid | 55.7 | 61.11 |
| VIT_04s0008g03300.t01 | Wine grape | cytosol | 58.65 | 59.66 |
| GSMUA_Achr10P... | Banana | nucleus | 50.63 | 50.85 |
| TraesCS7B01G272100.1 | Wheat | cytosol | 45.99 | 41.92 |
| TraesCS7A01G355600.1 | Wheat | cytosol | 46.84 | 41.89 |
| TraesCS7D01G367300.1 | Wheat | cytosol | 45.99 | 40.52 |
| Zm00001d046289_P001 | Maize | cytosol | 42.62 | 40.08 |
| CDY68837 | Canola | nucleus | 45.99 | 39.35 |
| HORVU7Hr1G088780.1 | Barley | cytosol | 45.15 | 39.34 |
| CDX97127 | Canola | nucleus | 45.57 | 38.99 |
| EER88508 | Sorghum | cytosol, mitochondrion, nucleus | 44.3 | 38.89 |
| Os06t0554100-00 | Rice | cytosol | 43.04 | 38.78 |
| Bra008950.1-P | Field mustard | nucleus | 45.15 | 38.63 |
| AT5G11620.1 | Thale cress | cytosol | 43.88 | 38.1 |
| CDX91202 | Canola | mitochondrion, plasma membrane, plastid | 20.25 | 26.52 |
Protein Annotations
| EntrezGene:107063098 | Gene3D:3.30.40.10 | MapMan:35.2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008270 |
| InterPro:IPR001841 | InterPro:IPR007527 | InterPro:IPR013083 | UniProt:M0ZQ92 | PFAM:PF04434 | PFAM:PF13639 |
| EnsemblPlantsGene:PGSC0003DMG400002225 | PGSC:PGSC0003DMG400002225 | EnsemblPlants:PGSC0003DMT400005677 | PFscan:PS50966 | PANTHER:PTHR21540 | PANTHER:PTHR21540:SF1 |
| SUPFAM:SSF57850 | UniParc:UPI0002964915 | RefSeq:XP_015170022.1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SWIM |
| SEG:seg | : | : | : | : | : |
Description
PHD family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400002225]
Coordinates
chr8:+:38834941..38836606
Molecular Weight (calculated)
27391.1 Da
IEP (calculated)
8.782
GRAVY (calculated)
-0.484
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MESIGSSSTP SNNHHHHHRR HLMPTQPLAD RIIRAVSHHL RLLHHYDTTF FILGATGNVY TVNLSTTPSC SCPDRTAPCK HILFVFIRVL GVSVDDMCLL
101: RRTLRPCELQ RLLSLPISTE SLANPNVRKR FHQLFFQERS KCSPLKIEIE KGVTCPICLE EMNKEERVAA CGTCRNPLHE ECLMSWKRSN RRRSIKCVIC
201: RARWRDVRAN SEQQDKYLNL SAYDDMQVED RQSHCGS
101: RRTLRPCELQ RLLSLPISTE SLANPNVRKR FHQLFFQERS KCSPLKIEIE KGVTCPICLE EMNKEERVAA CGTCRNPLHE ECLMSWKRSN RRRSIKCVIC
201: RARWRDVRAN SEQQDKYLNL SAYDDMQVED RQSHCGS
001: MESVGSNQIS PYVSNRDQRH FLAQPVADRI LRALRHRIRL LHRPNAGTFH VLGATCNVYT VTLMATPTCT CPDRKKPCKH ILFVLIRVLG IPLDDKCLRQ
101: RRLRTCLLFH LFSAPTRPDC LASFRLQQRF LQLFPATTSQ PGYTTNSSSS TSKMENEVDE EPATCPICLD DIIAIENVDG GNGGGKEKET AVVKCRVCKN
201: KVHDECMLAW RKSRGRRPAI CVVCRARWPA NRSSKNPNVG DNNENCHGNC YLNLAPYVDE EVEDGVGTSQ RPC
101: RRLRTCLLFH LFSAPTRPDC LASFRLQQRF LQLFPATTSQ PGYTTNSSSS TSKMENEVDE EPATCPICLD DIIAIENVDG GNGGGKEKET AVVKCRVCKN
201: KVHDECMLAW RKSRGRRPAI CVVCRARWPA NRSSKNPNVG DNNENCHGNC YLNLAPYVDE EVEDGVGTSQ RPC
Arabidopsis Description
PHD family protein [Source:UniProtKB/TrEMBL;Acc:Q9LYG8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.