CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01631
EES09201
EES16322
OQU78227

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11620.1	EES01631	AT2G41100.1	17360592
AT5G11620.1	EES09201	AT2G41100.1	17360592
AT5G11620.1	EES16322	AT2G41100.1	17360592
AT5G11620.1	OQU78227	AT2G41100.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046289_P001	Maize	cytosol	80.0	85.71
Os06t0554100-00	Rice	cytosol	67.04	68.82
TraesCS7B01G272100.1	Wheat	cytosol	65.56	68.08
TraesCS7A01G355600.1	Wheat	cytosol	65.93	67.17
HORVU7Hr1G088780.1	Barley	cytosol	67.04	66.54
TraesCS7D01G367300.1	Wheat	cytosol	65.93	66.17
GSMUA_Achr10P...	Banana	nucleus	49.26	56.36
KRH52755	Soybean	nucleus, plastid	44.07	51.74
VIT_04s0008g03300.t01	Wine grape	cytosol	44.44	51.5
KRH62075	Soybean	nucleus, plastid	40.74	50.93
Solyc11g071190.1.1	Tomato	plastid	25.93	46.36
PGSC0003DMT400047744	Potato	nucleus	39.63	44.4
PGSC0003DMT400005677	Potato	nucleus	38.89	44.3
Solyc08g066550.2.1	Tomato	nucleus, plastid	38.89	43.93
CDX97127	Canola	nucleus	41.11	40.07
CDY68837	Canola	nucleus	40.74	39.71
Bra008950.1-P	Field mustard	nucleus	40.74	39.71
AT5G11620.1	Thale cress	cytosol	40.0	39.56
CDX91202	Canola	mitochondrion, plasma membrane, plastid	18.52	27.62

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	EntrezGene:8076703	UniProt:C5Z4J9	EnsemblPlants:EER88508	ProteinID:EER88508
ProteinID:EER88508.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0008270	InterPro:IPR001841	InterPro:IPR007527
InterPro:IPR013083	PFAM:PF04434	PFscan:PS50089	PFscan:PS50966	PANTHER:PTHR21540	PANTHER:PTHR21540:SF1
EnsemblPlantsGene:SORBI_3010G164900	SUPFAM:SSF57850	UniParc:UPI0001A8921F	RefSeq:XP_002437141.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SWIM	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:48772483..48773787

Molecular Weight (calculated)

29350.9 Da

IEP (calculated)

8.499

GRAVY (calculated)

-0.288

Length

270 amino acids

Sequence
(BLAST)

001: MDSVASNTTT TTPFAAAGTT AAEEEEASTR RVANRIIRAL QHQLRLLHRA GAEFFVLGAT GNVYTVTLST APACTCPDPA VPCKHILFVL LRVLGLSLDE
101: ACVWRQTLRP CQVARLVGTP TTYPDVLAGA RARERFHQLW SARPANKAAD DRQEAASSRR PLVDGAACPV CLEEMRMAPA QASQGSGGTA AAPQAILTCR
201: TCRNAVHAEC FARWKRSRSR RAATCVVCRS RWRRPNREQE QEQYMNLAAY MNDDDGDVTM QSADGGLCAG

Best Arabidopsis Sequence Match ( AT5G11620.2 )
(BLAST)

001: MESVGSNQIS PYVSNRDQRH FLAQPVADRI LRALRHRIRL LHRPNAGTFH VLGATCNVYT VTLMATPTCT CPDRKKPCKH ILFVLIRVLG IPLDDKCLRQ
101: RRLRTCLLFH LFSAPTRPDC LASFRLQQRF LQLFPATTSQ PGYTTNSSSS TSKMENEVDE EPATCPICLD DIIAIENVDG GNGGGKEKET AVVKCRVCKN
201: KVHDECMLAW RKSRGRRPAI CVVCRARWPA NRSSKNPNVG DNNENCHGNC YLNLAPYVDE EVEDGVGTSQ RPC

Arabidopsis Description

PHD family protein [Source:UniProtKB/TrEMBL;Acc:Q9LYG8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.