CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, plastid

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plasma membrane, plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX95314
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11620.1	CDX73678	AT3G51920.1	17360592
AT5G11620.1	CDX95314	AT3G51920.1	17360592
AT5G11620.1	CDY23174	AT3G51920.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62075	Soybean	nucleus, plastid	28.73	24.07
AT5G11620.1	Thale cress	cytosol	35.36	23.44
CDX97127	Canola	nucleus	35.36	23.1
KRH52755	Soybean	nucleus, plastid	29.28	23.04
CDY68837	Canola	nucleus	34.81	22.74
VIT_04s0008g03300.t01	Wine grape	cytosol	28.73	22.32
GSMUA_Achr10P...	Banana	nucleus	28.73	22.03
Solyc11g071190.1.1	Tomato	plastid	18.23	21.85
PGSC0003DMT400005677	Potato	nucleus	26.52	20.25
Zm00001d046289_P001	Maize	cytosol	28.18	20.24
Solyc08g066550.2.1	Tomato	nucleus, plastid	26.52	20.08
PGSC0003DMT400047744	Potato	nucleus	26.52	19.92
Os06t0554100-00	Rice	cytosol	28.73	19.77
TraesCS7A01G355600.1	Wheat	cytosol	27.62	18.87
EER88508	Sorghum	cytosol, mitochondrion, nucleus	27.62	18.52
TraesCS7B01G272100.1	Wheat	cytosol	26.52	18.46
TraesCS7D01G367300.1	Wheat	cytosol	27.07	18.22
HORVU7Hr1G088780.1	Barley	cytosol	27.07	18.01

Protein Annotations

EnsemblPlants:CDX91202	EnsemblPlantsGene:GSBRNA2T00152014001	GO:A0A078DQK1	GO:GO:0003674	GO:GO:0005488	GO:GO:0008270
InterPro:IPR007527	InterPro:Znf_SWIM	PANTHER:PTHR21540	PANTHER:PTHR21540:SF1	PFAM:PF04434	PFscan:PS50966
ProteinID:CDX91202	ProteinID:CDX91202.1	SEG:seg	UniParc:UPI0004EE5E40	MapMan:35.2	:

Description

BnaC02g03950D

Coordinates

chrLK031865:+:1357998..1358978

Molecular Weight (calculated)

20025.5 Da

IEP (calculated)

4.188

GRAVY (calculated)

-0.259

Length

181 amino acids

Sequence
(BLAST)

001: MSWLSRWRIG YFEISVIGSV SSTVQTPTLF TYSVSLVMST PSVTLEATLT CTCPDRKKPC KHILFVLIRV LGIPLDDDNY YPHPAQFLQL LSTANSNYGD
101: ASSSSSTHEL ENEMEEEAAT CPICLDDIQV IQNVNGECVG GEEGERSVVK CMVNQQEQKN NSNCYLNLEE DDGVGTSQRP C

Best Arabidopsis Sequence Match ( AT5G11620.2 )
(BLAST)

001: MESVGSNQIS PYVSNRDQRH FLAQPVADRI LRALRHRIRL LHRPNAGTFH VLGATCNVYT VTLMATPTCT CPDRKKPCKH ILFVLIRVLG IPLDDKCLRQ
101: RRLRTCLLFH LFSAPTRPDC LASFRLQQRF LQLFPATTSQ PGYTTNSSSS TSKMENEVDE EPATCPICLD DIIAIENVDG GNGGGKEKET AVVKCRVCKN
201: KVHDECMLAW RKSRGRRPAI CVVCRARWPA NRSSKNPNVG DNNENCHGNC YLNLAPYVDE EVEDGVGTSQ RPC

Arabidopsis Description

PHD family protein [Source:UniProtKB/TrEMBL;Acc:Q9LYG8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.