Factsheet for Zm00001d046289_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005003_P002
Zm00001d008278_P001
Zm00001d010649_P001
Zm00001d028948_P001
Zm00001d038543_P004
Zm00001d038545_P001
Zm00001d041430_P001
Zm00001d043144_P001
Zm00001d047597_P001
Zm00001d052415_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11620.1	Zm00001d005003_P002	AT2G41100.1	17360592
AT5G11620.1	Zm00001d008278_P001	AT2G41100.1	17360592
AT5G11620.1	Zm00001d010649_P001	AT2G41100.1	17360592
AT5G11620.1	Zm00001d028948_P001	AT2G41100.1	17360592
AT5G11620.1	Zm00001d038543_P004	AT2G41100.1	17360592
AT5G11620.1	Zm00001d038545_P001	AT2G41100.1	17360592
AT5G11620.1	Zm00001d041430_P001	AT2G41100.1	17360592
AT5G11620.1	Zm00001d043144_P001	AT2G41100.1	17360592
AT5G11620.1	Zm00001d047597_P001	AT2G41100.1	17360592
AT5G11620.1	Zm00001d052415_P001	AT2G41100.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88508	Sorghum	cytosol, mitochondrion, nucleus	85.71	80.0
TraesCS7B01G272100.1	Wheat	cytosol	69.44	67.31
Os06t0554100-00	Rice	cytosol	69.05	66.16
TraesCS7A01G355600.1	Wheat	cytosol	69.05	65.66
HORVU7Hr1G088780.1	Barley	cytosol	70.24	65.07
TraesCS7D01G367300.1	Wheat	cytosol	69.44	65.06
GSMUA_Achr10P...	Banana	nucleus	50.0	53.39
VIT_04s0008g03300.t01	Wine grape	cytosol	45.24	48.93
KRH52755	Soybean	nucleus, plastid	44.44	48.7
KRH62075	Soybean	nucleus, plastid	41.27	48.15
Solyc11g071190.1.1	Tomato	plastid	27.38	45.7
PGSC0003DMT400047744	Potato	nucleus	41.27	43.15
Solyc08g066550.2.1	Tomato	nucleus, plastid	40.48	42.68
PGSC0003DMT400005677	Potato	nucleus	40.08	42.62
CDX97127	Canola	nucleus	41.67	37.91
CDY68837	Canola	nucleus	41.27	37.55
Bra008950.1-P	Field mustard	nucleus	41.27	37.55
AT5G11620.1	Thale cress	cytosol	40.48	37.36
CDX91202	Canola	mitochondrion, plasma membrane, plastid	20.24	28.18

Protein Annotations

EntrezGene:103638591	Gene3D:3.30.40.10	MapMan:35.2	ProteinID:AQL04045.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0008270	InterPro:IPR001841	InterPro:IPR007527	InterPro:IPR013083	UniProt:K7VHQ9	PFAM:PF04434
PFscan:PS50089	PFscan:PS50966	PANTHER:PTHR21540	PANTHER:PTHR21540:SF1	SUPFAM:SSF57850	UniParc:UPI000220DF79
EnsemblPlantsGene:Zm00001d046289	EnsemblPlants:Zm00001d046289_P001	EnsemblPlants:Zm00001d046289_T001	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SWIM
SEG:seg	:	:	:	:	:

Description

Putative SWIM zinc finger family protein

Coordinates

chr9:-:78457352..78458110

Molecular Weight (calculated)

27740.1 Da

IEP (calculated)

8.385

GRAVY (calculated)

-0.245

Length

252 amino acids

Sequence
(BLAST)

001: MESNTTPFAA VGTAAEEAST RRVANRIIRA LQHQLRLLHR AGAEFFVLGV TGNVYTVTLS TTPACTCPDP AVPCKHILFV LLRVLGLSLD EACVWRQTLH
101: PCQVARLVGT PTYPDVLAGA RARERFHQLW SARPANNVAD DRQEASSHRP LDGAACPVCL EEMAPAQPSQ GSGATAQAIL TCRTCRNAVH AECFTRWKRS
201: RSRRAATCVV CRSRWKKPNR EHEHEQYMNL AAYMNDDGDV TMLSADGWLC AG

Best Arabidopsis Sequence Match ( AT5G11620.2 )
(BLAST)

001: MESVGSNQIS PYVSNRDQRH FLAQPVADRI LRALRHRIRL LHRPNAGTFH VLGATCNVYT VTLMATPTCT CPDRKKPCKH ILFVLIRVLG IPLDDKCLRQ
101: RRLRTCLLFH LFSAPTRPDC LASFRLQQRF LQLFPATTSQ PGYTTNSSSS TSKMENEVDE EPATCPICLD DIIAIENVDG GNGGGKEKET AVVKCRVCKN
201: KVHDECMLAW RKSRGRRPAI CVVCRARWPA NRSSKNPNVG DNNENCHGNC YLNLAPYVDE EVEDGVGTSQ RPC

Arabidopsis Description

PHD family protein [Source:UniProtKB/TrEMBL;Acc:Q9LYG8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.