Factsheet for Solyc08g066550.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11620.1	Solyc01g008950.2.1	AT2G41100.1	17360592
AT5G11620.1	Solyc10g077010.1.1	AT2G41100.1	17360592
AT5G11620.1	Solyc10g081170.1.1	AT2G41100.1	17360592
AT5G11620.1	Solyc11g072240.1.1	AT2G41100.1	17360592
AT5G11620.1	Solyc12g099990.1.1	AT2G41100.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400005677	Potato	nucleus	92.89	93.67
Solyc11g071190.1.1	Tomato	plastid	43.1	68.21
KRH52755	Soybean	nucleus, plastid	57.32	59.57
KRH62075	Soybean	nucleus, plastid	53.56	59.26
VIT_04s0008g03300.t01	Wine grape	cytosol	57.74	59.23
GSMUA_Achr10P...	Banana	nucleus	49.37	50.0
TraesCS7B01G272100.1	Wheat	cytosol	46.03	42.31
TraesCS7A01G355600.1	Wheat	cytosol	46.44	41.89
TraesCS7D01G367300.1	Wheat	cytosol	46.03	40.89
Zm00001d046289_P001	Maize	cytosol	42.68	40.48
CDY68837	Canola	nucleus	45.61	39.35
AT5G11620.1	Thale cress	cytosol	44.77	39.19
Os06t0554100-00	Rice	cytosol	43.1	39.16
CDX97127	Canola	nucleus	45.19	38.99
HORVU7Hr1G088780.1	Barley	cytosol	44.35	38.97
EER88508	Sorghum	cytosol, mitochondrion, nucleus	43.93	38.89
Bra008950.1-P	Field mustard	nucleus	44.35	38.27
CDX91202	Canola	mitochondrion, plasma membrane, plastid	20.08	26.52

Protein Annotations

EnsemblPlants:Solyc08g066550.2.1	EnsemblPlantsGene:Solyc08g066550.2	Gene3D:3.30.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0008270
InterPro:IPR001841	InterPro:IPR007527	InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SWIM
PANTHER:PTHR21540	PANTHER:PTHR21540:SF1	PFAM:PF04434	PFAM:PF13639	PFscan:PS50966	SEG:seg
SUPFAM:SSF57850	UniParc:UPI000276BCB3	UniProt:K4CLN1	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr8:+:55293421..55294897

Molecular Weight (calculated)

27568.3 Da

IEP (calculated)

8.451

GRAVY (calculated)

-0.456

Length

239 amino acids

Sequence
(BLAST)

001: MESIGSSSTA SNNHHHHPHR RHLMPTQPLA DRIIRAVSHH LRLLHHYDTT FFILGATGNV YTVNLSTTPS CSCPDRTAPC KHILFVFIRV LGVSVDDMCL
101: LRRTLRPCEL QRLLSLPIST ESLANPNVRE RFHQLFFQER SKSSVLKIEI EKGVTCPICL EEMNKEERVG ICGTCKNPLH EECLMAWKRS NRRRSMKCVI
201: CRAKWRDLRA NCEQQDKYLN LSAYDDDMQV EDRQSHCGS

Best Arabidopsis Sequence Match ( AT5G11620.2 )
(BLAST)

001: MESVGSNQIS PYVSNRDQRH FLAQPVADRI LRALRHRIRL LHRPNAGTFH VLGATCNVYT VTLMATPTCT CPDRKKPCKH ILFVLIRVLG IPLDDKCLRQ
101: RRLRTCLLFH LFSAPTRPDC LASFRLQQRF LQLFPATTSQ PGYTTNSSSS TSKMENEVDE EPATCPICLD DIIAIENVDG GNGGGKEKET AVVKCRVCKN
201: KVHDECMLAW RKSRGRRPAI CVVCRARWPA NRSSKNPNVG DNNENCHGNC YLNLAPYVDE EVEDGVGTSQ RPC

Arabidopsis Description

PHD family protein [Source:UniProtKB/TrEMBL;Acc:Q9LYG8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.