Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68837 | Canola | nucleus | 68.86 | 67.87 |
| CDX97127 | Canola | nucleus | 68.5 | 67.51 |
| Bra008950.1-P | Field mustard | nucleus | 68.13 | 67.15 |
| KRH52755 | Soybean | nucleus, plastid | 43.22 | 51.3 |
| VIT_04s0008g03300.t01 | Wine grape | cytosol | 43.59 | 51.07 |
| KRH62075 | Soybean | nucleus, plastid | 40.29 | 50.93 |
| GSMUA_Achr10P... | Banana | nucleus | 42.86 | 49.58 |
| Solyc11g071190.1.1 | Tomato | plastid | 26.37 | 47.68 |
| Solyc08g066550.2.1 | Tomato | nucleus, plastid | 39.19 | 44.77 |
| PGSC0003DMT400005677 | Potato | nucleus | 38.1 | 43.88 |
| PGSC0003DMT400047744 | Potato | nucleus | 38.1 | 43.15 |
| TraesCS7B01G272100.1 | Wheat | cytosol | 38.83 | 40.77 |
| Zm00001d046289_P001 | Maize | cytosol | 37.36 | 40.48 |
| TraesCS7A01G355600.1 | Wheat | cytosol | 39.19 | 40.38 |
| EER88508 | Sorghum | cytosol, mitochondrion, nucleus | 39.56 | 40.0 |
| TraesCS7D01G367300.1 | Wheat | cytosol | 38.83 | 39.41 |
| Os06t0554100-00 | Rice | cytosol | 36.63 | 38.02 |
| HORVU7Hr1G088780.1 | Barley | cytosol | 37.36 | 37.5 |
| CDX91202 | Canola | mitochondrion, plasma membrane, plastid | 23.44 | 35.36 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | EntrezGene:831034 | ProteinID:AED91702.1 | EMBL:AK118062 | ProteinID:ANM69337.1 |
| ArrayExpress:AT5G11620 | EnsemblPlantsGene:AT5G11620 | RefSeq:AT5G11620 | TAIR:AT5G11620 | RefSeq:AT5G11620-TAIR-G | EnsemblPlants:AT5G11620.1 |
| TAIR:AT5G11620.1 | Unigene:At.32234 | EMBL:BT005601 | ProteinID:CAB87680.1 | EMBL:DQ059086 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009987 |
| GO:GO:0016301 | GO:GO:0016310 | GO:GO:0016740 | InterPro:IPR007527 | InterPro:IPR013083 | RefSeq:NP_001318543.1 |
| RefSeq:NP_196723.1 | PFAM:PF04434 | PFscan:PS50966 | PANTHER:PTHR21540 | PANTHER:PTHR21540:SF1 | UniProt:Q9LYG8 |
| SUPFAM:SSF57850 | UniParc:UPI000000C6C8 | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SWIM | SEG:seg | : |
Description
PHD family protein [Source:UniProtKB/TrEMBL;Acc:Q9LYG8]
Coordinates
chr5:-:3738729..3740164
Molecular Weight (calculated)
30609.8 Da
IEP (calculated)
8.679
GRAVY (calculated)
-0.421
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MESVGSNQIS PYVSNRDQRH FLAQPVADRI LRALRHRIRL LHRPNAGTFH VLGATCNVYT VTLMATPTCT CPDRKKPCKH ILFVLIRVLG IPLDDKCLRQ
101: RRLRTCLLFH LFSAPTRPDC LASFRLQQRF LQLFPATTSQ PGYTTNSSSS TSKMENEVDE EPATCPICLD DIIAIENVDG GNGGGKEKET AVVKCRVCKN
201: KVHDECMLAW RKSRGRRPAI CVVCRARWPA NRSSKNPNVG DNNENCHGNC YLNLAPYVDE EVEDGVGTSQ RPC
101: RRLRTCLLFH LFSAPTRPDC LASFRLQQRF LQLFPATTSQ PGYTTNSSSS TSKMENEVDE EPATCPICLD DIIAIENVDG GNGGGKEKET AVVKCRVCKN
201: KVHDECMLAW RKSRGRRPAI CVVCRARWPA NRSSKNPNVG DNNENCHGNC YLNLAPYVDE EVEDGVGTSQ RPC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.