Factsheet for VIT_04s0008g03300.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
nucleus 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11620.1	VIT_06s0009g01910.t01	AT2G41100.1	17360592
AT5G11620.1	VIT_08s0040g00470.t01	AT2G41100.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52755	Soybean	nucleus, plastid	68.24	69.13
KRH62075	Soybean	nucleus, plastid	63.52	68.52
Solyc11g071190.1.1	Tomato	plastid	39.06	60.26
PGSC0003DMT400005677	Potato	nucleus	59.66	58.65
Solyc08g066550.2.1	Tomato	nucleus, plastid	59.23	57.74
PGSC0003DMT400047744	Potato	nucleus	57.51	55.6
GSMUA_Achr10P...	Banana	nucleus	56.22	55.51
Zm00001d046289_P001	Maize	cytosol	48.93	45.24
EER88508	Sorghum	cytosol, mitochondrion, nucleus	51.5	44.44
AT5G11620.1	Thale cress	cytosol	51.07	43.59
TraesCS7B01G272100.1	Wheat	cytosol	48.5	43.46
TraesCS7A01G355600.1	Wheat	cytosol	49.36	43.4
Os06t0554100-00	Rice	cytosol	48.93	43.35
CDY68837	Canola	nucleus	51.5	43.32
CDX97127	Canola	nucleus	51.5	43.32
Bra008950.1-P	Field mustard	nucleus	51.5	43.32
TraesCS7D01G367300.1	Wheat	cytosol	48.93	42.38
HORVU7Hr1G088780.1	Barley	cytosol	47.64	40.81
CDX91202	Canola	mitochondrion, plasma membrane, plastid	22.32	28.73

Protein Annotations

EntrezGene:100266212	wikigene:100266212	Gene3D:3.30.40.10	MapMan:35.2	ProteinID:CCB46695	ProteinID:CCB46695.1
UniProt:F6H3D1	EMBL:FN595231	GO:GO:0003674	GO:GO:0005488	GO:GO:0008270	InterPro:IPR001841
InterPro:IPR007527	InterPro:IPR013083	EntrezGene:LOC100266212	wikigene:LOC100266212	PFAM:PF04434	PFAM:PF13639
PFscan:PS50966	PANTHER:PTHR21540	PANTHER:PTHR21540:SF1	SUPFAM:SSF57850	UniParc:UPI00015C865F	ArrayExpress:VIT_04s0008g03300
EnsemblPlantsGene:VIT_04s0008g03300	EnsemblPlants:VIT_04s0008g03300.t01	unigene:Vvi.22230	RefSeq:XP_002281202	RefSeq:XP_002281202.1	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SWIM	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:+:2748500..2749573

Molecular Weight (calculated)

26101.3 Da

IEP (calculated)

8.441

GRAVY (calculated)

-0.373

Length

233 amino acids

Sequence
(BLAST)

001: MESVASNSSP PEHRLHPRFK PTQPVADRIV RAIRHRLRLL HRSESNFFVL GATGNVYTVT LSTNPSCTCP DRTTPCKHIL FVFIKVLGVS LDDSCLRRRT
101: LRPCLLSHLL SKPTSPEAVA GAGVRERFHQ LFLQAREGSS RPAIEIEDGT MCPVCLDEMG RGEKVVACGT CRNPIHEECL LTWKRTRGRR SASCVICRAR
201: WSNRTDQERY LNLAAYVTDD DEVAEGDGGL WGD

Best Arabidopsis Sequence Match ( AT5G11620.2 )
(BLAST)

001: MESVGSNQIS PYVSNRDQRH FLAQPVADRI LRALRHRIRL LHRPNAGTFH VLGATCNVYT VTLMATPTCT CPDRKKPCKH ILFVLIRVLG IPLDDKCLRQ
101: RRLRTCLLFH LFSAPTRPDC LASFRLQQRF LQLFPATTSQ PGYTTNSSSS TSKMENEVDE EPATCPICLD DIIAIENVDG GNGGGKEKET AVVKCRVCKN
201: KVHDECMLAW RKSRGRRPAI CVVCRARWPA NRSSKNPNVG DNNENCHGNC YLNLAPYVDE EVEDGVGTSQ RPC

Arabidopsis Description

PHD family protein [Source:UniProtKB/TrEMBL;Acc:Q9LYG8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.