Factsheet for Os06t0554100-00

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0267900-01
Os01t0279300-01
Os01t0810300-01
Os03t0319300-01
Os05t0491000-01
Os05t0491100-01
Os07t0687200-02
Os12t0603800-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11620.1	Os01t0267900-01	AT2G41100.1	17360592
AT5G11620.1	Os01t0279300-01	AT2G41100.1	17360592
AT5G11620.1	Os01t0810300-01	AT2G41100.1	17360592
AT5G11620.1	Os03t0319300-01	AT2G41100.1	17360592
AT5G11620.1	Os05t0491000-01	AT2G41100.1	17360592
AT5G11620.1	Os05t0491100-01	AT2G41100.1	17360592
AT5G11620.1	Os07t0687200-02	AT2G41100.1	17360592
AT5G11620.1	Os12t0603800-00	AT2G41100.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G355600.1	Wheat	cytosol	69.58	69.06
Zm00001d046289_P001	Maize	cytosol	66.16	69.05
TraesCS7B01G272100.1	Wheat	cytosol	68.06	68.85
HORVU7Hr1G088780.1	Barley	cytosol	70.34	68.01
EER88508	Sorghum	cytosol, mitochondrion, nucleus	68.82	67.04
TraesCS7D01G367300.1	Wheat	cytosol	68.44	66.91
GSMUA_Achr10P...	Banana	nucleus	50.19	55.93
KRH52755	Soybean	nucleus, plastid	43.35	49.57
VIT_04s0008g03300.t01	Wine grape	cytosol	43.35	48.93
KRH62075	Soybean	nucleus, plastid	38.78	47.22
Solyc11g071190.1.1	Tomato	plastid	25.48	44.37
Solyc08g066550.2.1	Tomato	nucleus, plastid	39.16	43.1
PGSC0003DMT400005677	Potato	nucleus	38.78	43.04
PGSC0003DMT400047744	Potato	nucleus	38.4	41.91
CDX97127	Canola	nucleus	40.3	38.27
Bra008950.1-P	Field mustard	nucleus	40.3	38.27
CDY68837	Canola	nucleus	39.92	37.91
AT5G11620.1	Thale cress	cytosol	38.02	36.63
CDX91202	Canola	mitochondrion, plasma membrane, plastid	19.77	28.73

Protein Annotations

EntrezGene:107277449	Gene3D:3.30.40.10	MapMan:35.2	ProteinID:BAD53682.1	ProteinID:BAS98211.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0008270	InterPro:IPR001841	InterPro:IPR007527	InterPro:IPR013083	EnsemblPlantsGene:Os06g0554100
EnsemblPlants:Os06t0554100-00	PFAM:PF04434	PFAM:PF13639	PFscan:PS50089	PFscan:PS50966	PANTHER:PTHR21540
PANTHER:PTHR21540:SF1	UniProt:Q5Z9C5	SUPFAM:SSF57850	UniParc:UPI0000446E1D	RefSeq:XP_015642645.1	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SWIM	SEG:seg	:	:	:

Description

Hypothetical conserved gene. (Os06t0554100-00)

Coordinates

chr6:+:21060826..21061895

Molecular Weight (calculated)

28139.8 Da

IEP (calculated)

8.670

GRAVY (calculated)

-0.121

Length

263 amino acids

Sequence
(BLAST)

001: MEPVTAASAA AAASEEQVTR RVASRIIRAL QHQLRLLHRA GPEFFVLGAT GNVYTVTLAA APACTCPDPS VPCKHILFVL LRVLGLSLDE ACVWRQSLRP
101: CQVARLVAAP TCAEADVVAG PRARERFHQL WSARAAAKAE ESRRRRRRDD QAAAAGASGR LDGAACPVCL EEMSPPGAAA AAAMLLTCAM CRNSVHGECF
201: ARWKRSRGRR AATCVVCRAR WRQPSREQEK EPYINLSAYM NDAGGGDVNM VAADGDDGGL CAG

Best Arabidopsis Sequence Match ( AT5G11620.2 )
(BLAST)

001: MESVGSNQIS PYVSNRDQRH FLAQPVADRI LRALRHRIRL LHRPNAGTFH VLGATCNVYT VTLMATPTCT CPDRKKPCKH ILFVLIRVLG IPLDDKCLRQ
101: RRLRTCLLFH LFSAPTRPDC LASFRLQQRF LQLFPATTSQ PGYTTNSSSS TSKMENEVDE EPATCPICLD DIIAIENVDG GNGGGKEKET AVVKCRVCKN
201: KVHDECMLAW RKSRGRRPAI CVVCRARWPA NRSSKNPNVG DNNENCHGNC YLNLAPYVDE EVEDGVGTSQ RPC

Arabidopsis Description

PHD family protein [Source:UniProtKB/TrEMBL;Acc:Q9LYG8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.