CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH18664

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11620.1	KRG89812	AT2G41100.1	17360592
AT5G11620.1	KRG94975	AT2G41100.1	17360592
AT5G11620.1	KRH18664	AT2G41100.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52755	Soybean	nucleus, plastid	93.98	88.26
VIT_04s0008g03300.t01	Wine grape	cytosol	68.52	63.52
PGSC0003DMT400005677	Potato	nucleus	61.11	55.7
Solyc08g066550.2.1	Tomato	nucleus, plastid	59.26	53.56
Solyc11g071190.1.1	Tomato	plastid	37.04	52.98
PGSC0003DMT400047744	Potato	nucleus	58.8	52.7
GSMUA_Achr10P...	Banana	nucleus	56.48	51.69
Zm00001d046289_P001	Maize	cytosol	48.15	41.27
TraesCS7A01G355600.1	Wheat	cytosol	50.0	40.75
EER88508	Sorghum	cytosol, mitochondrion, nucleus	50.93	40.74
TraesCS7B01G272100.1	Wheat	cytosol	48.61	40.38
AT5G11620.1	Thale cress	cytosol	50.93	40.29
TraesCS7D01G367300.1	Wheat	cytosol	49.07	39.41
Bra008950.1-P	Field mustard	nucleus	50.46	39.35
CDY68837	Canola	nucleus	50.46	39.35
CDX97127	Canola	nucleus	50.46	39.35
HORVU7Hr1G088780.1	Barley	cytosol	49.07	38.97
Os06t0554100-00	Rice	cytosol	47.22	38.78
CDX91202	Canola	mitochondrion, plasma membrane, plastid	24.07	28.73

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	EMBL:ACUP02002217	EnsemblPlantsGene:GLYMA_04G084500	GO:GO:0003674	GO:GO:0005488
GO:GO:0008270	UniProt:I1JUW0	InterPro:IPR001841	InterPro:IPR007527	InterPro:IPR013083	EnsemblPlants:KRH62075
ProteinID:KRH62075	ProteinID:KRH62075.1	PFAM:PF04434	PFAM:PF13639	PFscan:PS50966	PANTHER:PTHR21540
PANTHER:PTHR21540:SF1	SUPFAM:SSF57850	UniParc:UPI0002962B1B	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SWIM
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:7164046..7164731

Molecular Weight (calculated)

24454.4 Da

IEP (calculated)

8.214

GRAVY (calculated)

-0.411

Length

216 amino acids

Sequence
(BLAST)

001: MESRASNSNS PYHYHHHPRF KPSQPISDRI VRALRHRLRL LHRSGSTFFI LGATGNVYTV TLSSSPSCTC PDRTTPCKHI LFVLIRVLGV SLDDVCLRRR
101: TPRPCQLQRL LGTPTLPEAL FFSGGSTETK IEMEEGATCP VCLEEMGKEQ NLVACGTCRN PIHEECLMKW KRTKGRSASC VICRARWRDR VEQDEYLNLS
201: AYVGEDDVEQ PDVCTC

Best Arabidopsis Sequence Match ( AT5G11620.2 )
(BLAST)

001: MESVGSNQIS PYVSNRDQRH FLAQPVADRI LRALRHRIRL LHRPNAGTFH VLGATCNVYT VTLMATPTCT CPDRKKPCKH ILFVLIRVLG IPLDDKCLRQ
101: RRLRTCLLFH LFSAPTRPDC LASFRLQQRF LQLFPATTSQ PGYTTNSSSS TSKMENEVDE EPATCPICLD DIIAIENVDG GNGGGKEKET AVVKCRVCKN
201: KVHDECMLAW RKSRGRRPAI CVVCRARWPA NRSSKNPNVG DNNENCHGNC YLNLAPYVDE EVEDGVGTSQ RPC

Arabidopsis Description

PHD family protein [Source:UniProtKB/TrEMBL;Acc:Q9LYG8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.