CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH18664

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11620.1	KRG89812	AT2G41100.1	17360592
AT5G11620.1	KRG94975	AT2G41100.1	17360592
AT5G11620.1	KRH18664	AT2G41100.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62075	Soybean	nucleus, plastid	88.26	93.98
VIT_04s0008g03300.t01	Wine grape	cytosol	69.13	68.24
PGSC0003DMT400005677	Potato	nucleus	61.3	59.49
Solyc11g071190.1.1	Tomato	plastid	37.83	57.62
Solyc08g066550.2.1	Tomato	nucleus, plastid	59.57	57.32
GSMUA_Achr10P...	Banana	nucleus	57.39	55.93
PGSC0003DMT400047744	Potato	nucleus	57.39	54.77
TraesCS7B01G272100.1	Wheat	cytosol	51.3	45.38
TraesCS7A01G355600.1	Wheat	cytosol	52.17	45.28
Zm00001d046289_P001	Maize	cytosol	48.7	44.44
TraesCS7D01G367300.1	Wheat	cytosol	51.74	44.24
EER88508	Sorghum	cytosol, mitochondrion, nucleus	51.74	44.07
HORVU7Hr1G088780.1	Barley	cytosol	51.3	43.38
Os06t0554100-00	Rice	cytosol	49.57	43.35
AT5G11620.1	Thale cress	cytosol	51.3	43.22
CDY68837	Canola	nucleus	51.3	42.6
CDX97127	Canola	nucleus	51.3	42.6
Bra008950.1-P	Field mustard	nucleus	51.3	42.6
CDX91202	Canola	mitochondrion, plasma membrane, plastid	23.04	29.28

Protein Annotations

EntrezGene:100775505	Gene3D:3.30.40.10	MapMan:35.2	EMBL:ACUP02003433	EnsemblPlantsGene:GLYMA_06G086100	GO:GO:0003674
GO:GO:0005488	GO:GO:0008270	InterPro:IPR001841	InterPro:IPR007527	InterPro:IPR013083	UniProt:K7KTY5
EnsemblPlants:KRH52755	ProteinID:KRH52755	ProteinID:KRH52755.1	PFAM:PF04434	PFAM:PF13639	PFscan:PS50966
PANTHER:PTHR21540	PANTHER:PTHR21540:SF1	SUPFAM:SSF57850	UniParc:UPI000233A31C	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SWIM	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:6641038..6641730

Molecular Weight (calculated)

25971.3 Da

IEP (calculated)

8.445

GRAVY (calculated)

-0.374

Length

230 amino acids

Sequence
(BLAST)

001: MESRASNSNS PYHYHHHHPR FKPSQPISDR IVRALRHRLR LLHRSGSTFF ILGATGNVYT VTLSSSPSCT CPDRTTPCKH ILFVFIRVLG VSLDDVCLRR
101: RTLRPCQLQR LLGAPTLPEV VAGGTLRQRF HQLFFGGGST AGPKIEMEEG ATCPVCLEEM GKEQNLVACG TCRNPIHEEC LIKWKRTKGR SASCVICRAR
201: WRDRVEQDEY LNLSAYVGED DMEEPDVCTC

Best Arabidopsis Sequence Match ( AT5G11620.2 )
(BLAST)

001: MESVGSNQIS PYVSNRDQRH FLAQPVADRI LRALRHRIRL LHRPNAGTFH VLGATCNVYT VTLMATPTCT CPDRKKPCKH ILFVLIRVLG IPLDDKCLRQ
101: RRLRTCLLFH LFSAPTRPDC LASFRLQQRF LQLFPATTSQ PGYTTNSSSS TSKMENEVDE EPATCPICLD DIIAIENVDG GNGGGKEKET AVVKCRVCKN
201: KVHDECMLAW RKSRGRRPAI CVVCRARWPA NRSSKNPNVG DNNENCHGNC YLNLAPYVDE EVEDGVGTSQ RPC

Arabidopsis Description

PHD family protein [Source:UniProtKB/TrEMBL;Acc:Q9LYG8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.