Factsheet for Bra008950.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra018296.1-P
Bra033467.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11620.1	Bra000214.1-P	AT2G41100.1	17360592
AT5G11620.1	Bra018296.1-P	AT3G51920.1	17360592
AT5G11620.1	Bra033467.1-P	AT3G51920.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97127	Canola	nucleus	97.83	97.83
CDY68837	Canola	nucleus	96.39	96.39
AT5G11620.1	Thale cress	cytosol	67.15	68.13
VIT_04s0008g03300.t01	Wine grape	cytosol	43.32	51.5
KRH52755	Soybean	nucleus, plastid	42.6	51.3
KRH62075	Soybean	nucleus, plastid	39.35	50.46
Solyc11g071190.1.1	Tomato	plastid	27.08	49.67
GSMUA_Achr10P...	Banana	nucleus	41.16	48.31
PGSC0003DMT400005677	Potato	nucleus	38.63	45.15
Solyc08g066550.2.1	Tomato	nucleus, plastid	38.27	44.35
PGSC0003DMT400047744	Potato	nucleus	36.82	42.32
Zm00001d046289_P001	Maize	cytosol	37.55	41.27
EER88508	Sorghum	cytosol, mitochondrion, nucleus	39.71	40.74
Os06t0554100-00	Rice	cytosol	38.27	40.3
TraesCS7A01G355600.1	Wheat	cytosol	38.27	40.0
TraesCS7B01G272100.1	Wheat	cytosol	37.55	40.0
TraesCS7D01G367300.1	Wheat	cytosol	37.55	38.66
HORVU7Hr1G088780.1	Barley	cytosol	37.91	38.6

Protein Annotations

EnsemblPlants:Bra008950.1	EnsemblPlants:Bra008950.1-P	EnsemblPlantsGene:Bra008950	Gene3D:3.30.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0008270	InterPro:IPR007527	InterPro:IPR013083	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SWIM	PANTHER:PTHR21540
PANTHER:PTHR21540:SF1	PFAM:PF04434	PFscan:PS50966	SEG:seg	SUPFAM:SSF57850	UniParc:UPI0002544114
UniProt:M4CXK3	MapMan:35.2	:	:	:	:

Description

AT5G11620 (E=4e-087) | SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-related

Coordinates

chrA10:+:14550806..14551847

Molecular Weight (calculated)

31066.0 Da

IEP (calculated)

8.494

GRAVY (calculated)

-0.495

Length

277 amino acids

Sequence
(BLAST)

001: MESVGSNDSD QISPYVSNRD QRHLLAHQPV EDRIVRALRH RLRLLSRPND ATFHVLGATC NVYTVTLTAT PTCTCPDRKK PCKHILFVLI RVLGIPLDDK
101: CLRQRRLRPC LLYRLVSAPT RPDYLASFHL QQRFLQLLST VNSHYGNTSS STTPAPENEV EDEAATCPIC LDDINVIKSV NGEHVGGEES ERAVVKCRVC
201: KNKVHDECML KWRASRGRRP AICVVCRSRW RRGSGSSRTP NVGGSNEINS HGNCYLNLAP YVNEEDEDGV GTSQRSC

Best Arabidopsis Sequence Match ( AT5G11620.2 )
(BLAST)

001: MESVGSNQIS PYVSNRDQRH FLAQPVADRI LRALRHRIRL LHRPNAGTFH VLGATCNVYT VTLMATPTCT CPDRKKPCKH ILFVLIRVLG IPLDDKCLRQ
101: RRLRTCLLFH LFSAPTRPDC LASFRLQQRF LQLFPATTSQ PGYTTNSSSS TSKMENEVDE EPATCPICLD DIIAIENVDG GNGGGKEKET AVVKCRVCKN
201: KVHDECMLAW RKSRGRRPAI CVVCRARWPA NRSSKNPNVG DNNENCHGNC YLNLAPYVDE EVEDGVGTSQ RPC

Arabidopsis Description

PHD family protein [Source:UniProtKB/TrEMBL;Acc:Q9LYG8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.