Factsheet for Solyc11g071190.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
extracellular 1
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11620.1	Solyc01g008950.2.1	AT2G41100.1	17360592
AT5G11620.1	Solyc10g077010.1.1	AT2G41100.1	17360592
AT5G11620.1	Solyc10g081170.1.1	AT2G41100.1	17360592
AT5G11620.1	Solyc11g072240.1.1	AT2G41100.1	17360592
AT5G11620.1	Solyc12g099990.1.1	AT2G41100.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047744	Potato	nucleus	88.08	55.19
Solyc08g066550.2.1	Tomato	nucleus, plastid	68.21	43.1
VIT_04s0008g03300.t01	Wine grape	cytosol	60.26	39.06
KRH52755	Soybean	nucleus, plastid	57.62	37.83
KRH62075	Soybean	nucleus, plastid	52.98	37.04
GSMUA_Achr10P...	Banana	nucleus	48.34	30.93
TraesCS7A01G355600.1	Wheat	cytosol	49.01	27.92
Zm00001d046289_P001	Maize	cytosol	45.7	27.38
TraesCS7B01G272100.1	Wheat	cytosol	47.02	27.31
TraesCS7D01G367300.1	Wheat	cytosol	48.34	27.14
CDX97127	Canola	nucleus	49.67	27.08
Bra008950.1-P	Field mustard	nucleus	49.67	27.08
CDY68837	Canola	nucleus	49.01	26.71
AT5G11620.1	Thale cress	cytosol	47.68	26.37
HORVU7Hr1G088780.1	Barley	cytosol	47.02	26.1
EER88508	Sorghum	cytosol, mitochondrion, nucleus	46.36	25.93
Os06t0554100-00	Rice	cytosol	44.37	25.48
CDX91202	Canola	mitochondrion, plasma membrane, plastid	21.85	18.23

Protein Annotations

EnsemblPlants:Solyc11g071190.1.1	EnsemblPlantsGene:Solyc11g071190.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0008270	InterPro:IPR007527
InterPro:Znf_SWIM	PANTHER:PTHR21540	PANTHER:PTHR21540:SF1	PFAM:PF04434	PFscan:PS50966	SEG:seg
UniParc:UPI000276955A	UniProt:K4DAH6	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr11:+:54716880..54717890

Molecular Weight (calculated)

17511.4 Da

IEP (calculated)

10.765

GRAVY (calculated)

-0.258

Length

151 amino acids

Sequence
(BLAST)

001: MESLPSSSSN HHNHHHHRYR RLTPTQPLAD RIFRALSHHL LLLHRRDTTF YVLGATCNVY TVTISTTPSC SCPDRTTPCK HILFVLIRVL GVSIDDTCLY
101: RRRLRPRHLQ RLLNLPISTE VLATSEVREM FHQLFSQQPK RSSPVIIKVS L

Best Arabidopsis Sequence Match ( AT5G11620.2 )
(BLAST)

001: MESVGSNQIS PYVSNRDQRH FLAQPVADRI LRALRHRIRL LHRPNAGTFH VLGATCNVYT VTLMATPTCT CPDRKKPCKH ILFVLIRVLG IPLDDKCLRQ
101: RRLRTCLLFH LFSAPTRPDC LASFRLQQRF LQLFPATTSQ PGYTTNSSSS TSKMENEVDE EPATCPICLD DIIAIENVDG GNGGGKEKET AVVKCRVCKN
201: KVHDECMLAW RKSRGRRPAI CVVCRARWPA NRSSKNPNVG DNNENCHGNC YLNLAPYVDE EVEDGVGTSQ RPC

Arabidopsis Description

PHD family protein [Source:UniProtKB/TrEMBL;Acc:Q9LYG8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.